Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8d16
(632 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11020| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_47207| Best HMM Match : NUDE_C (HMM E-Value=0) 31 1.0
SB_21783| Best HMM Match : Keratin_B2 (HMM E-Value=0.81) 29 3.1
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0) 29 3.1
SB_48017| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-05) 28 7.2
SB_31379| Best HMM Match : Pou (HMM E-Value=0) 28 7.2
SB_22355| Best HMM Match : Y_phosphatase (HMM E-Value=0) 28 7.2
SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) 28 7.2
SB_56211| Best HMM Match : SRP19 (HMM E-Value=0.51) 27 9.6
>SB_11020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 31.1 bits (67), Expect = 0.78
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 515 WRIRALQPFMVKYFCSNPSGG-AVCLPMVL 601
W ++ + VK+FCS PS G AVC MVL
Sbjct: 13 WAVKMVLLCAVKWFCSVPSNGFAVCRQMVL 42
>SB_47207| Best HMM Match : NUDE_C (HMM E-Value=0)
Length = 294
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +3
Query: 279 QALKPDPLENLH---IETGPLHAKGLVKPLIFTVGVSAASLLG 398
+A+ +PL NLH I T PLHA PL + +SA +++G
Sbjct: 164 EAIPSEPLANLHTNTIATSPLHAGYGSSPLTPSARISALNIVG 206
>SB_21783| Best HMM Match : Keratin_B2 (HMM E-Value=0.81)
Length = 316
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 485 KTANLLVFGAWRIRALQPFMVKYFCSNPSG 574
+TA +VF +WR+R L + +Y S P G
Sbjct: 74 RTAYRVVFSSWRVRTLYRVVSRYIVSCPYG 103
>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
Length = 1127
Score = 29.1 bits (62), Expect = 3.1
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Frame = +3
Query: 237 LIRNSFHNSKRGSRQALKPDPLENLHIETGPLHAKGLVKPLIFTVGVSAASLLGCV-IWE 413
+I HN PDPL + GP+ A + K ++ ++ L G + +W+
Sbjct: 628 IINLGHHNGTVTMWSPSSPDPLVKMLCHRGPVQAIAIDKQGLY---MATTGLDGQMKMWD 684
Query: 414 YENLRVHASSLLRRPGTWLTAQQKKLLTY*YLEH 515
+ S L P + LT Q++LL Y H
Sbjct: 685 VRTYKQLNSYLTFTPASSLTISQRRLLGVAYGPH 718
>SB_48017| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-05)
Length = 249
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 425 TGSRFFTTTKTRNVADCTTKKTANLLVFGAWRI 523
T +RF K A+ T ++ LL+ GAW I
Sbjct: 112 TANRFIAVAKPYRYANVMTTRSVRLLIAGAWVI 144
>SB_31379| Best HMM Match : Pou (HMM E-Value=0)
Length = 310
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -2
Query: 463 VPGLRSSEEA*TRRFSYSHITQPSKLAAETPTVKISGFTNPFACNGPVSI 314
+PGL SS A + + +H A+ PTV S F PF P++I
Sbjct: 87 IPGLHSSHSADSGGYD-AHDILDQISASLQPTVSESQFDKPFETPSPINI 135
>SB_22355| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 1252
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Frame = +3
Query: 168 NVSANICKPPLFNQVWLPPKNGRLIRNSFHNSKRGSRQA---LKPDPLENLHIETGPLHA 338
N +A P +WLPP +G L S G + L D ++ L E P
Sbjct: 8 NFTAISLSPTSIQLIWLPPLDGELTGYKVTYSTPGGEKKMLNLAVDIVQLLISELEPYTG 67
Query: 339 KGLVKPLIFTVGVSAASLLGC 401
+ + VG+ A+++ C
Sbjct: 68 YNITLRAVNKVGIGPAAIIFC 88
>SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 431 SRFFTTTKTRNVADCTTKKTANLLVFGAWRIRALQP--FMVK 550
+R+F +T + T + LL+ G W + AL P F+V+
Sbjct: 122 NRYFKVVRTNYYRNLFTPRRTKLLICGCWLLAALVPTLFLVR 163
>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
Length = 413
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 425 TGSRFFTTTKTRNVADCTTKKTANLLVFGAWRI 523
T +RF K A+ T ++ LL+ GAW I
Sbjct: 276 TANRFIAVAKPYRYANVMTTRSVRLLIAGAWVI 308
>SB_56211| Best HMM Match : SRP19 (HMM E-Value=0.51)
Length = 488
Score = 27.5 bits (58), Expect = 9.6
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Frame = -3
Query: 510 PNTSKLAVFFVVQSATFLVFVVVKKREPVDSHI--PILHSLVNWLLRLPQ*K*AVSLILS 337
PN +L V +S LV + + KR+ +D+ + P+ HS V + +LS
Sbjct: 44 PNEGRLIVLCKDKSTELLVGIAIFKRQNIDADLVSPLPHSQVPVFAAVRH----QYWVLS 99
Query: 336 HVTGQFQYVDFPKGQVSELAANLFLNCEMNY 244
+V + DF + + + L N E Y
Sbjct: 100 YVVRRKDSRDFEQDTLLRINTTLLRNLEARY 130
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,168,749
Number of Sequences: 59808
Number of extensions: 362592
Number of successful extensions: 837
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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