Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8d16
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23518-1|AAC70883.1|  124|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF045642-6|AAC02590.1|  632|Caenorhabditis elegans Hypothetical ...    27   8.4  
AF039710-2|AAB96690.1|  419|Caenorhabditis elegans Hypothetical ...    27   8.4  

>U23518-1|AAC70883.1|  124|Caenorhabditis elegans Hypothetical
           protein F21D12.2 protein.
          Length = 124

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +3

Query: 162 TLNVSANICKPPLFNQVWLPPKNGRLIRNSFHNSKRGSRQALKPDPLENLHIETG 326
           T+ +   I K  LF   +  P     +   F++SKR  +   +PD LEN  +E G
Sbjct: 9   TIKLIRRIRKCLLFFMPFFMPTYAYYLSAFFYSSKRRKKNDFRPDCLENTVVEQG 63


>AF045642-6|AAC02590.1|  632|Caenorhabditis elegans Hypothetical
           protein C17H12.12 protein.
          Length = 632

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/73 (20%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = -3

Query: 534 CRALMRHAPNTSKLAVFFVVQSATFLVFVVVKKREPVDSHIPILHSLVNWLL-RLPQ*K* 358
           C  L+    ++ KL +  +++ +T  ++  +  R P+   IP++  + +WL+ + P+   
Sbjct: 197 CVNLIADYESSPKLTMVQLMRLSTCSIYACMAVRMPLKKKIPLIFMVCDWLIEKKPRLDT 256

Query: 357 AVSLILSHVTGQF 319
            + +I S V  ++
Sbjct: 257 VIGIIQSLVFDRY 269


>AF039710-2|AAB96690.1|  419|Caenorhabditis elegans Hypothetical
           protein C46E10.5 protein.
          Length = 419

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = -3

Query: 459 LVFVVVKKREPVDSHIPILHSLVNWLL 379
           L F+ VKKRE +  HIP L S VN LL
Sbjct: 25  LKFLSVKKREQIHIHIPELRS-VNALL 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,829,558
Number of Sequences: 27780
Number of extensions: 280754
Number of successful extensions: 740
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)