Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8d14
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   2.3  
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||...    26   4.1  
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|...    26   4.1  
SPAC926.05c |||diphthamide biosynthesis protein Dph4 |Schizosacc...    25   7.1  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   9.4  

>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 378  KHIDCVLSEGVYLDIRS 328
            +HI CVL++G Y+D+ S
Sbjct: 1335 EHISCVLTQGAYIDLIS 1351


>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 330 YGYQGIPPQIGHSQCALPCTGTLGVVPKNMG-WLWTAD 440
           YGYQG+ P++  S   L   G  G+V   MG   WT D
Sbjct: 254 YGYQGLNPKLAESAVHL---GAKGLVLAAMGATSWTDD 288


>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 330 YGYQGIPPQIGHSQCALPCTGTLGVVPKNMG-WLWTAD 440
           YGYQG+ P++  S   L   G  G+V   MG   WT D
Sbjct: 254 YGYQGLNPKLAESAVHL---GAKGLVLAAMGATSWTDD 288


>SPAC926.05c |||diphthamide biosynthesis protein Dph4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 45  CTTCGGYENTGEDLHKGQEIFPC 113
           C   GGY  T +DL   + + PC
Sbjct: 99  CGDLGGYVVTEDDLENNRSVVPC 121


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -3

Query: 566 FFSWFRLYRSRVPQFPCIKNA*ETLRNGTRLPPIFHLQAWHIIS 435
           F  W         Q P +KN  E ++   RL P   LQAW+ +S
Sbjct: 279 FLQWNNPTEDDKKQIP-VKNPTECVQLVIRLHPSAFLQAWNYLS 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,329,848
Number of Sequences: 5004
Number of extensions: 42466
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)