Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8d14
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0719 + 19716536-19716857,19716949-19717101,19717493-197177... 31 1.0
02_05_0336 + 28033315-28033365,28033580-28033585,28033798-280338... 31 1.0
04_04_0927 + 29467121-29467168,29467518-29467604,29468180-294682... 30 1.8
05_01_0048 + 331155-333077,333208-333354,333540-334087,334481-33... 29 4.2
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290... 28 5.6
05_03_0258 - 11153709-11156090 28 7.4
04_04_1657 - 35102751-35102868,35102987-35103504,35104065-351042... 28 7.4
01_07_0288 + 42534552-42534558,42535302-42537280,42537367-425375... 28 7.4
06_01_0286 - 2094920-2097805 27 9.7
>09_04_0719 +
19716536-19716857,19716949-19717101,19717493-19717707,
19717785-19717855,19717998-19718157,19718598-19718790,
19718936-19719091,19719229-19719317,19719602-19719695,
19719870-19720039
Length = 540
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +3
Query: 348 PPQIGHSQCALPCTGTLGVVPKNMGWLWTADNVPGLKVKNGWKPGAISKRL 500
P + + A+PCTG G G+LW + PG + W+ SK+L
Sbjct: 89 PLSVAVADAAVPCTGATGA---GQGYLWMSHRTPG---SDTWELAVRSKQL 133
>02_05_0336 +
28033315-28033365,28033580-28033585,28033798-28033884,
28034741-28034830,28035736-28037778,28037916-28038062,
28038148-28038560,28038656-28038755
Length = 978
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 3 SCECTFGFTRKTTYCTTCG 59
+C+ TFGFTRK C CG
Sbjct: 561 NCQLTFGFTRKKHNCYNCG 579
>04_04_0927 +
29467121-29467168,29467518-29467604,29468180-29468269,
29468547-29468741,29469056-29471080,29471208-29471354,
29471520-29471923,29472015-29472144
Length = 1041
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 3 SCECTFGFTRKTTYCTTCG 59
SC+ FGFTRK C CG
Sbjct: 618 SCQMVFGFTRKEHNCYNCG 636
>05_01_0048 +
331155-333077,333208-333354,333540-334087,334481-334616
Length = 917
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 3 SCECTFGFTRKTTYCTTCG 59
SC+ FGFTRK C CG
Sbjct: 434 SCQQPFGFTRKRHNCYNCG 452
>02_01_0399 -
2905026-2905406,2905522-2905630,2905809-2907475,
2907650-2907790,2907870-2908043,2908577-2908851,
2909592-2909755,2910409-2910536,2910628-2910734,
2911747-2911880,2912266-2912441,2912530-2914257,
2915084-2915239,2915328-2915486,2915581-2915751,
2915931-2916047,2916417-2916473,2916565-2916680,
2916790-2916916,2917862-2917945
Length = 2056
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 21 GFTRKTTYCTTCGGYENTGEDLHKGQEIFPCPIFH 125
G +T C +CG EN + H G P PI+H
Sbjct: 50 GLPLETGKCESCGASENGKCEGHFGYIELPVPIYH 84
>05_03_0258 - 11153709-11156090
Length = 793
Score = 27.9 bits (59), Expect = 7.4
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Frame = +3
Query: 264 VESERDTXXXXXXXXXXXXXXXYGYQGIPPQI--GHSQCALPCTGTLGVVPKNMGWLWTA 437
VE RDT Y ++ I G + C L V+ + W TA
Sbjct: 457 VELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWS-TA 515
Query: 438 DNVPGLKVKNGWKPGAISKRLL 503
++ +KNG+KP S LL
Sbjct: 516 QSIVSKMLKNGFKPNDQSYSLL 537
>04_04_1657 -
35102751-35102868,35102987-35103504,35104065-35104211,
35104289-35106262,35106964-35107089,35107178-35107264,
35107335-35107424,35107725-35107811,35108248-35108300,
35109339-35109387
Length = 1082
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 3 SCECTFGFTRKTTYCTTCG 59
SC FGFTRK C CG
Sbjct: 641 SCRQPFGFTRKRHNCYNCG 659
>01_07_0288 +
42534552-42534558,42535302-42537280,42537367-42537513,
42537982-42538526,42538906-42538981,42539357-42539437
Length = 944
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 3 SCECTFGFTRKTTYCTTCG 59
SC FGFTRK C CG
Sbjct: 458 SCRQPFGFTRKRHNCHNCG 476
>06_01_0286 - 2094920-2097805
Length = 961
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 339 QGIPPQIGHSQCALPCTGTLGVVPKNMGWLWTA 437
Q + Q+G L TGTLG +P WLWT+
Sbjct: 444 QWLQTQVGMQTLDLHRTGTLGQLP---DWLWTS 473
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,169,821
Number of Sequences: 37544
Number of extensions: 278498
Number of successful extensions: 661
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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