Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8d11
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44955| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   2e-11
SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   5e-07
SB_33472| Best HMM Match : DUF1309 (HMM E-Value=3.1e-16)               38   0.005
SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019)                35   0.038
SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.12 
SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18)                  30   1.4  
SB_1703| Best HMM Match : Extensin_2 (HMM E-Value=0.26)                30   1.4  
SB_50551| Best HMM Match : Extensin_2 (HMM E-Value=0.41)               29   1.9  
SB_51274| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_40686| Best HMM Match : rve (HMM E-Value=0.00016)                   28   5.8  
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  

>SB_44955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
 Frame = +3

Query: 156 TVGHQQHDPSRYRSPMYSFXXXXXXXXXXXXXXXXYRIDR-VTRDGLVSAPAWSFGARFP 332
           TVG + HD  +  +P +SF                Y +   +T+ G    PA+S  +R  
Sbjct: 154 TVGKKNHDVRKTTNPAFSFGQRHRDFFTQISPGPKYMVPSGLTQCGKDGTPAFSLYSRAK 213

Query: 333 SRAATRAPGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYALKLGSG 500
            +  +  PGPG ++PE+     + +AP+YS G+R  +A ++  P+PN+Y+L   +G
Sbjct: 214 EKNLSHVPGPGEYSPEKHSIPHERKAPSYSFGSRTKYAQKQITPSPNSYSLPALTG 269



 Score = 33.1 bits (72), Expect = 0.15
 Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
 Frame = +3

Query: 153 TTVGHQQHDPSRYRSPMYSFXXXXXXXXXXXXXXXXYRI--DRVTRDGLVSAPAWSFGA- 323
           TT  +  HD +R R P +SF                  +   R+TR G    P +S G  
Sbjct: 31  TTCNYNMHDVTRNRRPAFSFGNKHMHALTNDCSPGPMYLPDSRITRVGAEGNPKYSLGGT 90

Query: 324 -RFPSRAATRAPGP 362
            R+  +   R PGP
Sbjct: 91  DRYAKKTILRPPGP 104



 Score = 31.1 bits (67), Expect = 0.62
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 318 GARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGAR 434
           G  F    +T+ PGPG H+PE+   M    AP  S G +
Sbjct: 324 GRNFMPGDSTQKPGPGQHSPEKV-VMHQKAAPKVSFGIK 361


>SB_46589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 562

 Score = 51.2 bits (117), Expect = 5e-07
 Identities = 33/120 (27%), Positives = 47/120 (39%), Gaps = 2/120 (1%)
 Frame = +3

Query: 162 GHQQHDPSRYRSPMYSFXXXXXXXXXXXXXXXXYRID-RVTRDGLVSAPAWSFGARFPSR 338
           G+  HDP +++ P +SF                Y I  R+TR G    PA++   R    
Sbjct: 348 GYNDHDPRKHKKPAWSFGLKLGLKSQNVGPGPAYLIPARITRTGTDGTPAYTLHDRTQLN 407

Query: 339 AATRAPGPGSHAPERCPPMKDPRAPAYSM-GARLGFAPRRAGPAPNAYALKLGSGSPAYT 515
            A   P PG++     P     R PAYSM G           P P A++ + G     +T
Sbjct: 408 KAFSTPAPGTYKVHN-PDYNKKRMPAYSMNGRNYMTGDNTLKPGPGAHSPEKGGSQSLFT 466



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
 Frame = +3

Query: 303 PAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYA 482
           PAWSFG +   ++    PGP    P R         PAY++  R       + PAP  Y 
Sbjct: 360 PAWSFGLKLGLKSQNVGPGPAYLIPARITRTGTDGTPAYTLHDRTQLNKAFSTPAPGTYK 419

Query: 483 LKLGSGS----PAYTMGAR 527
           +     +    PAY+M  R
Sbjct: 420 VHNPDYNKKRMPAYSMNGR 438



 Score = 34.7 bits (76), Expect = 0.050
 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 11/74 (14%)
 Frame = +3

Query: 339 AATRAPGPGSHA-PERCPPMK-DPRA---PAYSMGARLGFAPRRAGPAPNAYAL-----K 488
           A  R PGP  +  P  C     DPR    PA+S G +LG   +  GP P AY +     +
Sbjct: 331 AMFRGPGPAKYRLPGGCGYNDHDPRKHKKPAWSFGLKLGLKSQNVGPGP-AYLIPARITR 389

Query: 489 LGS-GSPAYTMGAR 527
            G+ G+PAYT+  R
Sbjct: 390 TGTDGTPAYTLHDR 403


>SB_33472| Best HMM Match : DUF1309 (HMM E-Value=3.1e-16)
          Length = 97

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +3

Query: 348 RAPGPGSHAPERCPPMKDPRAPAYSMGAR 434
           + P PG+++PE+  P  +  APAYSMG R
Sbjct: 4   KTPAPGAYSPEKVHPQGERHAPAYSMGGR 32


>SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019)
          Length = 1008

 Score = 35.1 bits (77), Expect = 0.038
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 342 ATRAPGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAP 470
           +T +PG   H+    PPM    AP+++   RLG +P R  P P
Sbjct: 38  STMSPGTQDHSRTPTPPMSVQNAPSWNQSPRLGMSPARP-PVP 79


>SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = -1

Query: 443 EAESSAHGVGRSAGVLHRGAALGSVRARPWGASSRARRKPGAEAPGGRGHESVPRDPVDA 264
           +  SS HG   S   + R A+  S + R   + S +R KP    P   G+ SV R P D+
Sbjct: 173 KTSSSGHGQHSSRTAVRRSASFSSSQRRT--SESESRSKPAVGKPRPVGNASVVRSPADS 230


>SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18)
          Length = 1085

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +3

Query: 357  GPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGP 464
            GP  +AP R P    P  PA+ MGAR   AP    P
Sbjct: 962  GPRHYAPPRAPQSYAPPPPAHFMGARYP-APYHRAP 996


>SB_1703| Best HMM Match : Extensin_2 (HMM E-Value=0.26)
          Length = 307

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/68 (29%), Positives = 28/68 (41%)
 Frame = +3

Query: 303 PAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGARLGFAPRRAGPAPNAYA 482
           P W+   + P   + RA  P   APE  PP+   RA ++  G R    P    P  N + 
Sbjct: 63  PTWTAPQQDPPVDSARARSPPWTAPEPNPPVDSARARSF-RGQRKSQIPTWTAPELNPHV 121

Query: 483 LKLGSGSP 506
               S +P
Sbjct: 122 DSATSRNP 129


>SB_50551| Best HMM Match : Extensin_2 (HMM E-Value=0.41)
          Length = 376

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 285 DGLVSAPAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMGARL 437
           + L + P W+    +P   + +A  P   A ER PP  D R      G RL
Sbjct: 143 ENLRTIPPWTAPEPYPPVDSAKAGPPMDRARERSPPHVDSRRARSPRGRRL 193


>SB_51274| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 402 PRAPAYSMGARLGFAPRRAGPAPNAYALKLGSG 500
           P  P+Y  G +L F+      AP+  AL LG+G
Sbjct: 221 PGYPSYGHGTQLKFSRHMTSSAPDFNALSLGNG 253


>SB_40686| Best HMM Match : rve (HMM E-Value=0.00016)
          Length = 1586

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
 Frame = +3

Query: 312 SFGARFPSRAATRAPGPGSHAPERCPPMKDPRAP----AYSMGARLGFAPRRAGPAPNAY 479
           S G R  S + + A  PG    ++  P + PR P    A     R+   P  A P    Y
Sbjct: 450 SNGIRGVSSSLSSADEPGMSVSDKRDPQRTPRTPLGLKAERTVHRVTLNPSTASPGETIY 509

Query: 480 --ALKLGSGSPAYTMGARVG 533
              LKL  G        RVG
Sbjct: 510 VAVLKLSEGVTLVPGSLRVG 529


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 330  PSRAATRAPGPGSHAPERCPPMKDP 404
            P   +TR+P  GSH+P   PP   P
Sbjct: 2303 PGSNSTRSPSTGSHSPSVPPPPPPP 2327


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,983,095
Number of Sequences: 59808
Number of extensions: 255255
Number of successful extensions: 1028
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)