Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8d10
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0331 + 17648876-17649016,17650593-17650898                       28   5.8  
09_04_0011 + 13703564-13703766,13704685-13705526,13705628-137057...    28   5.8  
04_01_0527 - 6913266-6913802                                           28   7.6  
02_04_0471 + 23192001-23192102,23192229-23192356,23192440-231931...    28   7.6  

>12_02_0331 + 17648876-17649016,17650593-17650898
          Length = 148

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 500 HPWRRWSRISENDCRDGSAPPATRGCVRPTPSW 402
           H  RRW   S    R G    + RG +R +P W
Sbjct: 84  HGKRRWQDASNEVSRGGDVITSARGEIRSSPRW 116


>09_04_0011 +
           13703564-13703766,13704685-13705526,13705628-13705704,
           13706294-13706339,13706479-13706722,13710078-13710150,
           13711119-13711235
          Length = 533

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 459 SRWQRSTRDPWLCSPDAVME 400
           +RW  S+RDPWL S    M+
Sbjct: 464 TRWSNSSRDPWLSSNSCNMD 483


>04_01_0527 - 6913266-6913802
          Length = 178

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = -1

Query: 509 KVNHPWRRWSRISENDCRDGSAPPATRGCVRPTPSWNATLTTPCAA 372
           ++ HP RR  R     CR    PP     + P PS  A    P AA
Sbjct: 94  RLGHPVRRRRRAHRRQCRPSPPPP-----LSPEPSTAAVAEPPAAA 134


>02_04_0471 +
           23192001-23192102,23192229-23192356,23192440-23193108,
           23193900-23194086
          Length = 361

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +1

Query: 382 GVVRVAFH--DGVGRTQPRVAGGALPSRQSFSEIRLH 486
           G++++A H   G GR   RVAGG  P R+ F  +RLH
Sbjct: 249 GLLQLARHFFAGCGR---RVAGGCTPCRRFFLLLRLH 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,098,848
Number of Sequences: 37544
Number of extensions: 335799
Number of successful extensions: 986
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)