Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8d10
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46218| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   6e-04
SB_20108| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)         29   2.6  
SB_8177| Best HMM Match : TSP_1 (HMM E-Value=6e-38)                    29   3.4  
SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_23779| Best HMM Match : 7tm_1 (HMM E-Value=5e-36)                   28   5.9  
SB_59668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39)                   28   5.9  
SB_12390| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)                        28   7.8  

>SB_46218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 644

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = -3

Query: 504 KPSLEEVESNLRERLSRWQRSTRDPWLCSPDAVME 400
           K   + V   L+++L+ WQ ST DPW+C+P  V+E
Sbjct: 253 KEKFKVVFKGLKKKLNIWQNSTNDPWICAPGGVLE 287


>SB_20108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 131 PVIYLRCRSEEFCDCQWNTKS 193
           PV+Y+RC   ++C   W+ KS
Sbjct: 359 PVLYIRCEDPKYCPVLWHYKS 379


>SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)
          Length = 1306

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 131  PVIYLRCRSEEFCDCQWNTKS 193
            PV+Y+RC   ++C   W+ KS
Sbjct: 1128 PVLYIRCEDPKYCPVLWHYKS 1148


>SB_8177| Best HMM Match : TSP_1 (HMM E-Value=6e-38)
          Length = 950

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 494 WRRWSRISENDCRDGSAPPATRGCVRPTPS 405
           W +WS + +N C  GS    TR C  PTP+
Sbjct: 81  WSQWS-LCDNPC-GGSVVNRTRTCTNPTPT 108


>SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -1

Query: 494 WRRWSRISENDCRDGSAPPATRGC 423
           +R W    ENDCRDGS       C
Sbjct: 95  YRHWRCDGENDCRDGSDETGCGSC 118


>SB_23779| Best HMM Match : 7tm_1 (HMM E-Value=5e-36)
          Length = 301

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 388 VRVAFHDGVGRTQP-RVAGGALPSRQSFSEIRLHLLQGWFTLII 516
           +  +F D   R  P   + G+LPS   FS IRL ++  +  + +
Sbjct: 4   INESFPDATNRPLPSNASNGSLPSNTDFSTIRLGMIPAYSVIFV 47


>SB_59668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 623

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 441 WSAAIATIVLGDSTPPPPGMVYLDHQRRLRSENKTANNL 557
           WSA+     LG   PP  G+V ++H+ +  S + T   L
Sbjct: 86  WSASTTGARLGQHQPPGQGLVSINHRGKAWSASTTGARL 124


>SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39)
          Length = 1024

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 441 WSAAIATIVLGDSTPPPPGMVYLDHQRRLRSENKTANNL 557
           WSA+     LG   PP  G+V ++H+ +  S + T   L
Sbjct: 526 WSASTTGARLGQHQPPGQGLVSINHRGKAWSASTTGARL 564


>SB_12390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 868

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 412 VGRTQPRVAGGALPSRQSFSEIRLH 486
           VG  +P+++GG LPS   F  IR H
Sbjct: 512 VGSRRPKLSGGGLPSGGGFPCIRSH 536


>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2681

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 494  WRRWSRISENDCRDGSAPPATRGCVRPTPSW 402
            W  WS  S++ C +G     TR C  P P+W
Sbjct: 1943 WSAWSDCSKS-CGEGERY-RTRNCTNPPPAW 1971


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,717,430
Number of Sequences: 59808
Number of extensions: 383632
Number of successful extensions: 1017
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)