Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8d07
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    26   4.0  
SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomy...    25   7.0  
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    25   9.2  

>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -1

Query: 527 FLKSRHPIHPCQSPVPLH 474
           FLK  HPI PC S V LH
Sbjct: 749 FLKLIHPIVPCISGVMLH 766


>SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 228

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 537 CSLKEKVPVERISPQAPKVD 596
           C+LK K PVE I P   K+D
Sbjct: 117 CALKPKTPVEVILPFVEKLD 136


>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -1

Query: 620 YLACFAIPIHLWSLRTYSFHRHLFLETAFRFFLKSRHPIHP 498
           Y   F+I    WS    S+    F  T   F+L ++H  HP
Sbjct: 421 YSLSFSIINIFWSTALKSYIFEKFTNTILGFWLSTQHHKHP 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,058,751
Number of Sequences: 5004
Number of extensions: 35696
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)