Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8d07
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0177 + 32163393-32163443,32163711-32163803,32163875-321640...    29   4.1  
01_05_0174 + 18919759-18920265,18920381-18920443,18921060-189217...    29   4.1  
04_01_0446 - 5815231-5816202                                           28   5.4  
11_01_0357 + 2715271-2715509,2716200-2716281,2717117-2717251,271...    28   7.2  
11_01_0324 - 2428035-2428514                                           28   7.2  

>03_06_0177 +
           32163393-32163443,32163711-32163803,32163875-32164071,
           32164157-32164262,32164391-32164537,32164637-32164756
          Length = 237

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 596 IHLWSLRTYSFHRHLF-LETAFRFFLKSRHPIHPCQSPVPLHFCRV 462
           I +W+L  Y+ HR LF +ET   +   + + +H C    P+   R+
Sbjct: 91  IFIWTLIEYTLHRFLFHIETKTYWANTAHYLLHGCHHKHPMDSLRL 136


>01_05_0174 +
           18919759-18920265,18920381-18920443,18921060-18921761,
           18922934-18923068,18923391-18923474,18924095-18924151,
           18924290-18924376,18924963-18925205
          Length = 625

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +3

Query: 270 KTTSRVISDSMQKITKKLTELMMKCQNERRGKMKKKNRWVNQPLLLGEDPD 422
           ++T   +    QK  +KL +L+   +N    + +  N+ ++ P+LL   PD
Sbjct: 444 RSTYEALGSDFQKYNQKLRQLLFNIKNSPVLRNRLMNKELDPPVLLTMSPD 494


>04_01_0446 - 5815231-5816202
          Length = 323

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
 Frame = +1

Query: 427 TSWSCKQDRRGPTRQKW----------RGTGLWQGWIGWRLFRKKRNAVSRKRCRW 564
           +S SC+  RRG   Q+W           G+G W+ W+G    R++       R RW
Sbjct: 248 SSPSCRAPRRGRRAQRWSGGDGLGWSRSGSGAWRRWMGMEPERRRWKRAESMR-RW 302


>11_01_0357 +
           2715271-2715509,2716200-2716281,2717117-2717251,
           2717428-2717457,2717486-2717661,2717743-2717894,
           2718395-2719083
          Length = 500

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
 Frame = +3

Query: 294 DSMQKITKKLTELMMKCQNERRGKMKKKNRWVNQPLLLGEDPD--VNL------LVLQAR 449
           D+M+KI K   +  ++ + + +G + KK   ++   L+  + +  V L      +  + R
Sbjct: 376 DAMKKIDKDKVKAALEKRRKSKGDVAKKVDIMDDDDLIERELEHGVELAAEDEKIKHERR 435

Query: 450 QAWPHSAKVEGH 485
           Q+WPHSA  E H
Sbjct: 436 QSWPHSAHREDH 447


>11_01_0324 - 2428035-2428514
          Length = 159

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +1

Query: 433 WSCKQDRRGPTRQKWRGTGLWQGWIGWRLFRK--KRNAV 543
           W    DR G  R++ RG+G  +GW G  ++R+  KRN V
Sbjct: 99  WRKGDDRGGGERRRRRGSG--RGWGGVGVYRETGKRNGV 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,180,151
Number of Sequences: 37544
Number of extensions: 222679
Number of successful extensions: 580
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)