Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8d07
         (638 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      28   5.6  
SB_40737| Best HMM Match : Extensin_2 (HMM E-Value=2.2)                28   7.4  
SB_59293| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   9.7  

>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 599  PIHLWSLRTYSFHRHLFLETAFRFFLKSRHPIH 501
            P H   LR +SFH  L     F + +   HP H
Sbjct: 1007 PFHYRLLRHHSFHYRLLRHHPFHYRVLRHHPFH 1039


>SB_40737| Best HMM Match : Extensin_2 (HMM E-Value=2.2)
          Length = 409

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/45 (22%), Positives = 21/45 (46%)
 Frame = -1

Query: 608 FAIPIHLWSLRTYSFHRHLFLETAFRFFLKSRHPIHPCQSPVPLH 474
           +A P H + + T ++H ++   + +  ++    P H C    P H
Sbjct: 262 YASPYHTYIIYTSTYHIYIIYASPYHIYIIYASPYHICIYASPYH 306


>SB_59293| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 326

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 258 CRPVKTTSRVISDSMQKITKKLTELMMKCQNERRGKMKKKNRWVNQPLLLGE 413
           CRP+ T S +++  M  +   L  ++  C N+   K  KK+       +LG+
Sbjct: 219 CRPLPTESILVAKWMHYVNSVLNPIIYACMNKDFRKAFKKHLMYACACMLGK 270


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,802,425
Number of Sequences: 59808
Number of extensions: 277948
Number of successful extensions: 683
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)