Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8d04
(622 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom... 64 1e-11
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi... 62 6e-11
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 31 0.18
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po... 28 0.95
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 28 0.95
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 28 0.95
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 28 1.3
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ... 27 2.9
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 25 6.7
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 25 6.7
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 25 6.7
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 25 8.8
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 25 8.8
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 8.8
>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 464
Score = 64.5 bits (150), Expect = 1e-11
Identities = 39/118 (33%), Positives = 59/118 (50%)
Frame = +1
Query: 244 YDLAVIGGGSGGLACAKEAVNLGAKVTVLDYVTPSPQGTKWGLGGTCVNVGCIPKKLMHQ 423
+D VIGGGSGGLA A+ A GAKV +++ LGGTCVN GC+PKK+M
Sbjct: 8 FDYLVIGGGSGGLASARRAAKHGAKVALIE--------ASGRLGGTCVNYGCVPKKIMWN 59
Query: 424 AALLGESIHEAVAYGWEVPSLDAIKINWPALTEAVQNHIKSVNWVTRVDLREXKIDYV 597
A L + A G+ P+ +W + +I +N + ++ + + Y+
Sbjct: 60 IADLVAKMKTAKQNGF--PNSQLGSFDWGMIKRKRDAYIGRLNGIYERNVNKDGVAYI 115
>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
Dld1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 62.1 bits (144), Expect = 6e-11
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 1/128 (0%)
Frame = +1
Query: 229 AGTYDYDLAVIGGGSGGLACAKEAVNLGAKVTVLDYVTPSPQGTKWGLGGTCVNVGCIPK 408
+G +YDL VIGGG GG A LG K ++ +GT LGGTC+NVGCIP
Sbjct: 41 SGNGEYDLCVIGGGPGGYVAAIRGAQLGLKTICVE-----KRGT---LGGTCLNVGCIPS 92
Query: 409 K-LMHQAALLGESIHEAVAYGWEVPSLDAIKINWPALTEAVQNHIKSVNWVTRVDLREXK 585
K L++ + + H+ G +V + +N + +A + +KS+ ++ K
Sbjct: 93 KALLNNSHIYHTVKHDTKRRGIDV---SGVSVNLSQMMKAKDDSVKSLTSGIEYLFKKNK 149
Query: 586 IDYV*RSG 609
++Y +G
Sbjct: 150 VEYAKGTG 157
Score = 26.6 bits (56), Expect = 2.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 250 LAVIGGGSGGLACAKEAVNLGAKVTVLDYV 339
+ V+GGG GL LGA+VTV++++
Sbjct: 220 MTVLGGGIIGLEMGSVWSRLGAEVTVVEFL 249
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 30.7 bits (66), Expect = 0.18
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 247 DLAVIGGGSGGLACAKEAVNLGAKVTVL 330
++ VIGGG G+ A A LGAK T+L
Sbjct: 18 NVVVIGGGHAGVEAAAAASRLGAKTTLL 45
>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 28.3 bits (60), Expect = 0.95
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 475 VPSLDAIKINWPALTEAVQNHIKSVNWVTRVDLR 576
V +LD + ++ + VQN +K+ +W R+D+R
Sbjct: 245 VTALDILSSSFSIMLPHVQNGVKNTSWPGRLDIR 278
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 28.3 bits (60), Expect = 0.95
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 250 LAVIGGGSGGLACAKEAVNLGAK 318
+A+IG G G++CA++ NL A+
Sbjct: 260 VAIIGAGMAGISCARQLTNLFAQ 282
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 28.3 bits (60), Expect = 0.95
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = -1
Query: 334 SPTQSL*HPSSQPPWRMPVHRSHLR---LQPDHSRMFLP 227
+P S+ +PSS PPW+ P +S ++ L P + F+P
Sbjct: 450 APALSM-NPSSLPPWQQPTQQSAVQPSNLVPSQNAPFIP 487
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 27.9 bits (59), Expect = 1.3
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +1
Query: 244 YDLAVIGGGSGGLACAKEAVNLGAKVTVL---DYVT-PSPQGTKWGLGG 378
+D+ +IGGG+ G A +A G V +L D+ + S + TK GG
Sbjct: 68 FDVLIIGGGATGTGVAVDASTRGLNVCLLEKTDFASETSSKSTKMAHGG 116
>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 634
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 567 NPGHPVHRFYVILYSFS*RWPVYLDRV 487
N G P+H FY+ + + RW +LD +
Sbjct: 343 NEGSPMHAFYIPSLNPAPRWCSFLDNI 369
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +1
Query: 250 LAVIGGGSG-GLACAKEAVNLGAKVTVL 330
+ V GG G G A AKE V GA VT++
Sbjct: 25 ILVTGGSQGLGKAIAKELVLRGANVTIV 52
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 336 VVQHSHFSTQVHSLLGACQST 274
V+ T+VH+LLGAC T
Sbjct: 1945 VIDQKFILTRVHNLLGACVDT 1965
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 247 DLAVIGGGSGGLACAKEAVNLGAK 318
D+ VIGGG G C +V GAK
Sbjct: 1899 DVIVIGGGDTGNDCLGTSVRHGAK 1922
Score = 25.0 bits (52), Expect = 8.8
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 202 IPARSPPEEAGTYDYDLAVIGGGSGGLACAKEAVNLGAKVTVLD 333
I R P E G +A+IG G GLA A + G V + +
Sbjct: 1745 IVPRPPAERTGRR---VAIIGSGPAGLAAADQLNRAGHHVVIYE 1785
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 439 ESIHEAVAYGWEVPSLDAIK 498
+SI +GWE+P LD +K
Sbjct: 483 QSIRITKFFGWELPMLDRVK 502
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -3
Query: 368 PHLVPCGEGVT*SNTVTLAPKFTASLAHASPPEPPP 261
P ++P GE V + P+ +A PE PP
Sbjct: 415 PPILPVGESVCLPPRTSAKPRIAEGIASLLNPEEPP 450
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 25.0 bits (52), Expect = 8.8
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 35 CLINKHEPKCYSKVYSISIF 94
CL N++EP CY + + +F
Sbjct: 1034 CLTNENEPVCYLGLQKLELF 1053
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,691
Number of Sequences: 5004
Number of extensions: 59019
Number of successful extensions: 150
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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