Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8d04
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.2  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   5.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.3  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   7.3  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   7.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 555 PVHRFYVILYSFS*RWPVYLD 493
           PVHR+Y  +   S R PV L+
Sbjct: 242 PVHRWYKFIEGSSRRQPVQLN 262


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 373 GGTCVNVGCIPKK 411
           GG C  VGCI +K
Sbjct: 71  GGHCEKVGCICRK 83


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 308 KFTASLAHASPPEPPPITARS 246
           +F   +A   PPEPP  T  S
Sbjct: 170 QFQTVVASMDPPEPPVPTVTS 190


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 394 GCIPKKLMHQAALLGESIHE 453
           GCI   L H+ AL+ +++ +
Sbjct: 54  GCIEACLFHRLALMNDNVFD 73


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 243 VVCSCLFGRGSSRDFGENS*FR 178
           V+ SC FG   S    ENS FR
Sbjct: 185 VIGSCAFGIDMSSMTNENSEFR 206


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,758
Number of Sequences: 438
Number of extensions: 4161
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)