Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8d03
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|... 51 2e-07
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.9
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 26 4.4
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 26 4.4
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 26 4.4
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 26 5.8
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 25 7.7
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|... 25 7.7
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 25 7.7
>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 50.8 bits (116), Expect = 2e-07
Identities = 58/231 (25%), Positives = 87/231 (37%), Gaps = 32/231 (13%)
Frame = +2
Query: 86 RQMLSEFLGTFLYLSLILLTG--TSLNQGPTGS----ALANGLLISSIIQFTGHISGGHL 247
R+ +EFLGT + + + + ++ G GS + A G + G ISGGH+
Sbjct: 311 REGFAEFLGTLVLVVFGVGSNLQATVTNGAGGSFESLSFAWGFGCMLGVYIAGGISGGHV 370
Query: 248 NPAITFGVMANGQITMVRGACYIAAQILGSIVGSSVAYAVTVSSLRSTLG---------- 397
NPA+T + + + YI QI G+ G ++AY SS+ G
Sbjct: 371 NPAVTISLAIFRKFPWYKVPIYIFFQIWGAFFGGALAYGYHWSSITEFEGGKDIRTPATG 430
Query: 398 ---TTVPNPNLRAEQIFAIEFLITFILVAVVLSVIDPNRXXXXXXXXXXXXXXXXTGCQC 568
T P P + F EF+ T +LV + +++D
Sbjct: 431 GCLYTNPKPYVTWRNAFFDEFIGTAVLVGCLFAILDDTNSPPTQGMTAFIVGLLIAAIGM 490
Query: 569 SCLPYTG-TLNPIRSLGPAVL------------MNSWDSHWVYWVGPISGG 682
+ T TLNP R LGP + + W W W G I GG
Sbjct: 491 ALGYQTSFTLNPARDLGPRMFAWWIGYGPHSFHLYHWWWTWGAWGGTIGGG 541
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = -1
Query: 555 VILRP--IAKAPEPMPAN--PRFGSITLNTTATKMNVIKNSMAKICSALKFGFGTVVPSV 388
++LR +A+ P MP + P S T + ++N++KN +A++ + + SV
Sbjct: 408 IVLRSETLAENPSNMPGSCLPGASSNTADEFTEQLNLLKNEVARLSAICPSPNSGINASV 467
Query: 387 LLNEDTV 367
L N D +
Sbjct: 468 LTNADNL 474
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 359 YAVTVSSLRSTLGTTVPNPNLRAEQIFAIEFLITFILVAVVLSVI 493
Y TVS ST T + NPN+ Q F + L+ +++SV+
Sbjct: 50 YIKTVSEDSSTGPTEIANPNVERRQEFKDSHPNIYSLLRLLISVL 94
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 570 EHWQPVILRPIAKAPEPMPANPRFGS 493
+HWQ V P+ K+ +P P P GS
Sbjct: 915 DHWQVVPGDPLDKSIKPKPLEPARGS 940
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 607 PDGIQSSSVR*TRTLAAGNTEANSESTRADASKSSVWVDN 488
PD ++S++ AGN E +T++D S S W+ N
Sbjct: 342 PDA-ENSNISKINISIAGNKELYGNATQSDPSLYSTWIAN 380
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +1
Query: 535 RYWPQYYRLPMFLSTLHWNSESHQVFRTRC 624
R W L MF+ T+HW S V C
Sbjct: 134 RKWNVEAALEMFMKTVHWRSREMNVGEIVC 163
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 7.7
Identities = 7/28 (25%), Positives = 16/28 (57%)
Frame = +2
Query: 584 TGTLNPIRSLGPAVLMNSWDSHWVYWVG 667
+ T+N + P L+ +W++ + W+G
Sbjct: 262 SSTINNAMVVAPVTLLKNWENEFYNWLG 289
>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 371
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = -1
Query: 204 EMRRPFAKALPVGP*FKLVPVSKIKDKYKKVPRNSESICRAS 79
E+R + + +G FK VP + I+ +YK V +N ++ ++S
Sbjct: 67 ELRIDYTDCMNIGDEFKQVPSTNIEFQYKNV-KNVTAMWKSS 107
>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 455
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 368 TVSSLRSTLGTTVPNPNLRAEQIFAIE 448
T S+LRST GT + PNL E +E
Sbjct: 198 TSSTLRSTQGTPMSFPNLALESADNVE 224
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,386
Number of Sequences: 5004
Number of extensions: 67410
Number of successful extensions: 183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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