Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8d03
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22077| Best HMM Match : MIP (HMM E-Value=0)                        128   3e-30
SB_32809| Best HMM Match : No HMM Matches (HMM E-Value=.)             115   3e-26
SB_22076| Best HMM Match : MIP (HMM E-Value=3.89981e-42)               71   9e-13
SB_33719| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   4e-06
SB_22128| Best HMM Match : MIP (HMM E-Value=9.1e-08)                   44   2e-04
SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)              30   1.5  
SB_34975| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                30   2.0  
SB_5433| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_25080| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)          28   8.1  

>SB_22077| Best HMM Match : MIP (HMM E-Value=0)
          Length = 374

 Score =  128 bits (310), Expect = 3e-30
 Identities = 63/152 (41%), Positives = 84/152 (55%), Gaps = 1/152 (0%)
 Frame = +2

Query: 227 HISGGHLNPAITFGVMANGQITMVRGACYIAAQILGSIVGSSVAYAVTVSSLRSTLGTTV 406
           HISGGH+NPA+T   M   +++ +RGA Y+  Q+ G I GS++ Y +T    R TLG TV
Sbjct: 192 HISGGHINPAVTISFMIVRKVSFLRGAFYVIGQVGGGIAGSAMLYGLTPVDKRGTLGATV 251

Query: 407 PNPNLRAEQIFAIEFLITFILVAVVLSVIDPNRXXXXXXXXXXXXXXXXTGCQCSCLPYT 586
           PN  +   Q F IEFL+TF+L   VL  +                         + L +T
Sbjct: 252 PNAGVSTGQAFGIEFLLTFLL---VLKSLPQRMPSAITMVTKYRWPLDCVSQSVTWLGFT 308

Query: 587 GT-LNPIRSLGPAVLMNSWDSHWVYWVGPISG 679
           G  +NP RS GPAV+MN W  HWVYW GP++G
Sbjct: 309 GCGINPARSFGPAVIMNIWTDHWVYWAGPVAG 340



 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 6/102 (5%)
 Frame = +2

Query: 47  IGINELKNYHVLARQMLSEFLGTFLYLSLILLTGTSL----NQGPTGS--ALANGLLISS 208
           IGI++LK        + +EFL TF ++ ++   G+ L    N  P     AL  GL I++
Sbjct: 36  IGISDLKKEEFWV-SVFAEFLATFFFVFMVC--GSCLLWDKNDPPAVQHIALCAGLGIAT 92

Query: 209 IIQFTGHISGGHLNPAITFGVMANGQITMVRGACYIAAQILG 334
                GH SGGH+NPA+T G +++ +I +++G CYI AQ  G
Sbjct: 93  WAMAVGHWSGGHINPAVTVGFLSSNKIAILQGVCYIVAQFFG 134


>SB_32809| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score =  115 bits (277), Expect = 3e-26
 Identities = 60/193 (31%), Positives = 108/193 (55%), Gaps = 5/193 (2%)
 Frame = +2

Query: 95  LSEFLGTFLYLSLILLTGTSLN--QGPTGS--ALANGLLISSIIQFTGHISGGHLNPAIT 262
           L+E L + +++ L+  +  S    Q P+    AL  GL  S+++    H++GG +NPA+ 
Sbjct: 70  LAELLASHVFVFLVCASCVSWPHFQAPSVQHIALTAGLTTSTLVMVMSHVTGGQINPAVA 129

Query: 263 FGVMANGQITMVRGACYIAAQILGSIVGSSVAYAVTVSSLRSTLGTTVPNPNLRAEQIFA 442
             ++   ++  V G  ++  Q LG ++G+++ + +T SS+R +LG TVP P ++  Q  A
Sbjct: 130 VAMVVTRRVKPVHGFGFVFRQGLGGLLGAALLFGLTPSSIRGSLGMTVPAPTIQVGQAVA 189

Query: 443 IEFLITFILVAVVLSVIDPNRXXXXXXXXXXXXXXXXTGCQCSCLPYTG-TLNPIRSLGP 619
           +E ++TF+LV  +L+  D  +                  C  + +P+TG ++NP RSLGP
Sbjct: 190 METILTFLLVFGILAATDERKALKGYEKAAAVGFCVFI-CHMAGIPFTGCSMNPARSLGP 248

Query: 620 AVLMNSWDSHWVY 658
           AV+M+ W  HW++
Sbjct: 249 AVVMDHWRHHWLF 261


>SB_22076| Best HMM Match : MIP (HMM E-Value=3.89981e-42)
          Length = 365

 Score = 70.9 bits (166), Expect = 9e-13
 Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
 Frame = +2

Query: 335 SIVGSSVAYAVTV--SSLRSTLGTTVPNPNLRAEQIFAIEFLITFILVAVVLSVIDPNRX 508
           +I G++  Y +    S   S L     +P++   Q   +E   TFILV +V +  D +R 
Sbjct: 187 TICGAAAIYGMASQHSVEASNLAVNARSPDVSIGQAVGMEIWATFILVLIVFAAGDSDRQ 246

Query: 509 XXXXXXXXXXXXXXXTGCQCSCLPYTG-TLNPIRSLGPAVLMNSWDSHWVYWVGPISG 679
                                 +P +G ++NP RS GPAV+MNSW  HW+YW+GPI+G
Sbjct: 247 HMRGYGPPLSIGIVVFINLSLTIPISGGSMNPARSFGPAVVMNSWKDHWMYWIGPIAG 304



 Score = 32.3 bits (70), Expect = 0.38
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +2

Query: 101 EFLGTFLYLSLILLTGTSLNQGPTGSA--LANGLLISSIIQFTGHISGGHLNPAITFG 268
           E   TF+ + ++   G S  Q   G    L+ G+++   +  T  ISGG +NPA +FG
Sbjct: 226 EIWATFILVLIVFAAGDSDRQHMRGYGPPLSIGIVVFINLSLTIPISGGSMNPARSFG 283


>SB_33719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 4/139 (2%)
 Frame = +2

Query: 92  MLSEFLGTFLYLSLILLTGTSLNQGPTGS--ALANGLLISSIIQFTGHISGG--HLNPAI 259
           + +E+LGT L++  +          P+    ALA G  ++++ Q    +S    H NPA+
Sbjct: 19  VFAEYLGTLLFMFSVSAASLRWEGTPSTLEIALAAGFSMATVTQVFRWVSRPLVHANPAV 78

Query: 260 TFGVMANGQITMVRGACYIAAQILGSIVGSSVAYAVTVSSLRSTLGTTVPNPNLRAEQIF 439
           T      G  ++V    Y+  Q  G       AYA      R TLG T         Q  
Sbjct: 79  TVASFLAGDTSLVASFLYVIVQCFGVCP----AYA------RGTLGATSLAVGTTPPQAL 128

Query: 440 AIEFLITFILVAVVLSVID 496
             E ++TF+LV+ +LS +D
Sbjct: 129 GTEIIVTFLLVSAILSTLD 147


>SB_22128| Best HMM Match : MIP (HMM E-Value=9.1e-08)
          Length = 235

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 23/96 (23%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
 Frame = +2

Query: 56  NELKNYHVLARQMLSEFLGTFLYLSLILLTGTSLNQGPT--GSALANGLLISSIIQFTGH 229
           N++++   +    L E  G+ LY  L   +  S +   +    AL+ G+L + ++     
Sbjct: 15  NDMESTGFIISASLVEIFGSLLYGFLGCASTVSFDSPRSIESIALSYGILYAVLVYILAP 74

Query: 230 ISGGHLNPAITFGVMANGQITMVRGACYIAAQILGS 337
            SGG++NP +T  ++   ++++++   YI +QI G+
Sbjct: 75  FSGGYVNPIVTIALLLTRKVSVLKAVFYIISQITGA 110


>SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)
          Length = 2007

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 26/83 (31%), Positives = 34/83 (40%)
 Frame = -1

Query: 669 GPTQYTQWESHEFINTAGPKDLMGFRVPV*GRQEHWQPVILRPIAKAPEPMPANPRFGSI 490
           G TQ+  W S     T   K   G  VP  GR  +   V     A APE  P      SI
Sbjct: 161 GKTQF--WSSSSSSPTVPNKTTNGISVPSVGRSSYSTRVSPITSALAPEQRPI--LGSSI 216

Query: 489 TLNTTATKMNVIKNSMAKICSAL 421
             N    ++N++ N+  +I S L
Sbjct: 217 VRNFEPERLNIVGNNPLRIVSDL 239


>SB_34975| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 909

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = -3

Query: 676 RNWPNPVHPMGIPRIH*YS---GS*RPDGIQSSSVR*TRTLAAGNTEANSESTRADASKS 506
           R +P+  H M   R+  Y    G  RP GI++  +   + LA+ +T+    +T       
Sbjct: 132 RFYPDTYHTMKQMRVELYGVPQGPWRPLGIENGRIPDDQMLASFHTDNKHNATHGRLYAE 191

Query: 505 SVWVDNA 485
           S W +NA
Sbjct: 192 SAWCNNA 198


>SB_5433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 29/106 (27%), Positives = 36/106 (33%)
 Frame = -1

Query: 552 ILRPIAKAPEPMPANPRFGSITLNTTATKMNVIKNSMAKICSALKFGFGTVVPSVLLNED 373
           IL P    P P+P   +         A     IK   A      KFG  T   +     D
Sbjct: 182 ILTPYGMLPYPVPQAAQTMPQASQDAALGKRTIKGMSAVQAELKKFGIPTAPKTTTGEAD 241

Query: 372 TVTA*ATDEPTMEPSICAAI*QAPLTIVI*PLAITPKVIAGFKCPP 235
             TA AT     +  I  AI Q  L  +  P++  P   A    PP
Sbjct: 242 AATATATAATPTDSPIWLAI-QKELKKLGIPISTKPPPTAAPTAPP 286


>SB_25080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1007

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 357 ATDEPTMEPSICAAI*QAPLTIVI*PLAITPKVIAGFKC 241
           A DE T + SIC  +  A + I I  L +TP  I+   C
Sbjct: 787 AIDEITFDHSICPVVPDARMPITISTLPVTPFPISSGNC 825


>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
          Length = 1494

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/64 (26%), Positives = 33/64 (51%)
 Frame = +2

Query: 17   MSTKARIGTIIGINELKNYHVLARQMLSEFLGTFLYLSLILLTGTSLNQGPTGSALANGL 196
            ++  + +   +  + L +  + +   LS+FL +   LS  L + +SL+  PT S+L +  
Sbjct: 1143 LTWSSSLSVFLTSSSLPSDFLTSSSSLSDFLTSSSLLSDFLTSSSSLSVFPTSSSLPSDF 1202

Query: 197  LISS 208
            L SS
Sbjct: 1203 LTSS 1206


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,984,701
Number of Sequences: 59808
Number of extensions: 520018
Number of successful extensions: 1257
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)