Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8d03
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   6.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.3  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   8.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.3  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 475 GRVKRYRPKPRICWHRLWCFRY 540
           G+ K+Y    + CWH   C +Y
Sbjct: 594 GQAKKYVAGEQCCWHCFNCTQY 615


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +2

Query: 314 IAAQILGSIVGSSVAYAVTVSSLRSTLGTTVPNPN 418
           +A  + GSI  S + Y +  ++++  +  T  +PN
Sbjct: 504 LAMYLYGSIDSSKINYRIFKANVKEAVKDTXCDPN 538


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 302 GACYIAAQILGSIVGSSVAYA 364
           G C     +LGSIVG+ V  A
Sbjct: 742 GFCITEVMMLGSIVGTPVHMA 762


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 302 GACYIAAQILGSIVGSSVAYA 364
           G C     +LGSIVG+ V  A
Sbjct: 780 GFCITEVMMLGSIVGTPVHMA 800


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = +1

Query: 34  NRHNYRHKRVKKLSCAGATNALRISGNFFVFILNFAH 144
           N H   H  V +  CA  T A +   +  + +  ++H
Sbjct: 33  NSHLKSHSNVYQYRCANCTYATKYCHSLKLHLRKYSH 69


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 543  PIAKAPEPMPANPR 502
            P++ +PEP P  PR
Sbjct: 1852 PVSGSPEPPPPPPR 1865


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 659 STPNGNPTNSLIQRVLKT*WDSEFQCKVD--KNIGS 558
           STP GN +++L++  +K  W+       D  +NIGS
Sbjct: 169 STPIGNLSHALLKDPVKEFWERRTLQISDGIENIGS 204


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 659 STPNGNPTNSLIQRVLKT*WDSEFQCKVD--KNIGS 558
           STP GN +++L++  +K  W+       D  +NIGS
Sbjct: 222 STPIGNLSHALLKDPVKEFWERRTLQISDGIENIGS 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,276
Number of Sequences: 438
Number of extensions: 5063
Number of successful extensions: 34
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)