Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8d02
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46218| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_5539| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.033)           30   1.8  
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    29   4.1  
SB_58780| Best HMM Match : VWA (HMM E-Value=1.3e-34)                   28   5.4  
SB_28392| Best HMM Match : Exo_endo_phos (HMM E-Value=0.77)            28   5.4  
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)                 28   5.4  
SB_59387| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_44503| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_38459| Best HMM Match : DUF948 (HMM E-Value=0.63)                   27   9.4  

>SB_46218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 644

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -3

Query: 441 LILYFLAKLKCLQSSCVIGKVIRGRLYGSKYNA 343
           LIL    +L+ L   CVI  V+RG L G  YNA
Sbjct: 528 LILQPACRLQDLDIQCVIEDVLRGNLRGINYNA 560


>SB_5539| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.033)
          Length = 551

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 227 ASSEARTKPRPASAGPTTQNDFQLLDEEYIRK 322
           AS + RT+ R    GP+      LLDE+YIR+
Sbjct: 4   ASGKYRTRHRCVFHGPSMSGPVHLLDEDYIRQ 35


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 146  TSCCTCEGHHSGAKSSLPLVC 208
            T  C C G+++GA  S+PL C
Sbjct: 4307 TFLCVCVGNYTGALCSIPLAC 4327


>SB_58780| Best HMM Match : VWA (HMM E-Value=1.3e-34)
          Length = 264

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 225 EHLRKPGQSPGLHQLGPQLKMISSCSTRSTSGKTLSCHRGRCI 353
           EH  + G S  L  + PQL+      TR  S     C RG+C+
Sbjct: 202 EHRFEIGSSVNLSSIIPQLRDRICAVTRPCSKNNNKCLRGKCV 244


>SB_28392| Best HMM Match : Exo_endo_phos (HMM E-Value=0.77)
          Length = 549

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 201 WSAWFLAMEHLRKPGQSPGLHQLGPQLKMISSCSTR-STSGKTLSCHRGRCI 353
           W      +   R   +SP LH   PQ +M SSC+TR S S  +L   R +C+
Sbjct: 14  WLQLISTLNFWRFSDRSP-LHTASPQHQMASSCTTRISYSASSLKTMR-KCL 63


>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 225  EHLRKPGQSPGLHQLGPQLKMISSCSTRSTSGKTLSCHRGRCI 353
            EH  + G S  L  + PQL+      TR  S     C RG+C+
Sbjct: 2445 EHRFEIGSSVNLSSIIPQLRDRICAVTRPCSKNNNKCLRGKCV 2487


>SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)
          Length = 390

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 126 ESPKNTLKVFKLFCLCFYHFFVCFNLFKFC 37
           ++ K    V  +F LC++ FFV F  F++C
Sbjct: 286 KATKTLAVVVGVFILCWFPFFVIFVTFQYC 315


>SB_59387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 152 CCTCEG-HHSGAKSSLPLVCLVPRDGASSEARTKP 253
           C  C G HH+  K + P  C V  DG ++ A  +P
Sbjct: 663 CRQCLGLHHNSRKKTEPANCTVSGDGLTTGAANQP 697


>SB_44503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1347

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = +2

Query: 212 VPRDGASSEARTKPRPASAGPTTQNDFQLL----DEEYIRKNFKLPQRALYLDPYRR 370
           VPR         +P+P   GP   +D  +     ++E +R N  LP+    LDP RR
Sbjct: 385 VPRRKCCKAGVVEPKPVVRGPDIGDDGAVWWISHEQEALRGNVLLPEVMEMLDPDRR 441


>SB_38459| Best HMM Match : DUF948 (HMM E-Value=0.63)
          Length = 276

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 96  KLFCLCFYHFFVCFNLFKFCTKNFMSFFRRY 4
           + + +CF ++ VCF  +K C + +    R Y
Sbjct: 36  RYYKVCFRYYKVCFRYYKVCVRYYKVCVRYY 66



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 96  KLFCLCFYHFFVCFNLFKFCTKNFMSFFRRY 4
           + + +CF ++ VCF  +K C + +    R Y
Sbjct: 78  RYYKVCFRYYKVCFRYYKVCVRYYKVCVRYY 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,641,910
Number of Sequences: 59808
Number of extensions: 430876
Number of successful extensions: 1285
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)