Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8d01
         (543 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2)                 28   4.3  
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  

>SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2)
          Length = 2658

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = -1

Query: 297  CLRLKNRHSFSFLNVKRRFLNCSKTADVNGLRDIYFTSITLLSAPTMS 154
            CL++ + +  S ++ + RF++  K  +V+    +Y T +TLLS  T S
Sbjct: 1211 CLKILSANKKSEID-RNRFMDLKKFTNVSATSQLYDTLLTLLSEMTPS 1257


>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3474

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = +1

Query: 319  WLP*LSVEVTLEIFTSKPRSKLILNEVHSVPTVRTK 426
            WL  + + VT++IF SKP S LIL  V  V  VR K
Sbjct: 2450 WLISMVMAVTVDIFVSKPLS-LILLVVFLVLLVRRK 2484


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,554,295
Number of Sequences: 59808
Number of extensions: 293549
Number of successful extensions: 606
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)