Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8c23
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    44   2e-05
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy...    29   0.51 
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    27   1.5  
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...    27   2.7  
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    25   8.3  

>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 17/81 (20%), Positives = 42/81 (51%)
 Frame = +3

Query: 210 DVDFAMDVETHSTRERQTELEEYPYEVLSTEEIVQHMVDCIKEVNTVVEIPATTTRILLN 389
           D D  +D +  +   ++       Y V+S  ++   + + I ++ +++++       L  
Sbjct: 29  DEDAEIDDDGFTVERKRRRAHSVSYRVVSVRDLRASLNEKINQLTSIIDLTREQVLGLYR 88

Query: 390 HFKWDKEKLMERFYDGDQDQL 452
           +FKW++E+L+ER+ D  ++ L
Sbjct: 89  YFKWNRERLLERYIDAPEESL 109


>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 427

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 324 DCIKEVNTVVEIPATTTRILLNHFKWDKEKLME 422
           + I E+   +++PA T + +L  F WD ++ +E
Sbjct: 8   EAIDELRNSLDVPADTAQSVLESFNWDVQEAIE 40


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 402 DKEKLMERFYDGDQDQLFSEARVINPFRK 488
           D  K+ +RFYD D +  F E+    PF K
Sbjct: 290 DDGKMTKRFYDLDGNDFFWESNASKPFPK 318


>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/62 (20%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +3

Query: 270 EEYPYEVLSTEE--IVQHMVDCIKEVNTVVEIPATTTRILLNHFKWDKEKLMERFYDGDQ 443
           EE+  + L  E   ++++M++ + E+N  + +P  ++ +L    +W  E      Y G +
Sbjct: 12  EEFVVDQLIAERSMLIKNMLEDVGEINVPIPLPNVSSNVLRKVLEW-CEHHKNDLYSGTE 70

Query: 444 DQ 449
           ++
Sbjct: 71  EE 72


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 391 ISNGTKRSLWNVFMMETRISCSLKLEL 471
           IS  + +SL+N +M  T   CS+  ++
Sbjct: 266 ISGSSTKSLYNDYMFHTEFKCSILYDI 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,430
Number of Sequences: 5004
Number of extensions: 48049
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)