Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8c23
(591 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0717 + 19706160-19706327,19707036-19707157,19707408-197075... 40 0.001
03_02_0275 + 7042433-7042732,7042864-7043140,7043751-7044231,704... 40 0.002
08_02_1429 + 27040293-27040523,27041618-27041739,27042290-270423... 36 0.018
09_06_0262 - 21921647-21922796,21922897-21923423 33 0.17
06_03_0585 - 22528082-22530100 31 0.69
06_03_0580 + 22489184-22491202 31 0.69
12_01_0811 - 7440413-7440712,7441285-7441398,7441448-7441705,744... 30 1.2
11_04_0035 - 12632439-12632728,12633000-12633093,12633118-126335... 27 8.5
06_02_0357 - 15123688-15123768,15123843-15124065,15124401-15124450 27 8.5
>09_04_0717 +
19706160-19706327,19707036-19707157,19707408-19707510,
19707644-19707734,19707960-19708132,19708534-19708622,
19708995-19709085,19709272-19709361,19709807-19709854,
19710033-19710104,19710181-19710274,19710350-19710494,
19710809-19710951,19711601-19711751,19712276-19712449,
19712799-19712874
Length = 609
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +3
Query: 189 GNESSGDDVDFA-MDVETHSTRERQTELEEYPYEVLSTEEIVQHMVDCIKEVNTVVEIPA 365
G S +D +F + + E Y VL+ ++I + + I V+ + +P
Sbjct: 26 GGSGSDEDEEFGGRGSDEGCEADEVVSTREQRYVVLTEDDIRERQEEMISRVSAIFSVPR 85
Query: 366 TTTRILLNHFKWDKEKLMERFYDGDQD 446
+ +LL H+KW KL + ++ +++
Sbjct: 86 ESACVLLRHYKWSISKLSDDWFADEEN 112
>03_02_0275 +
7042433-7042732,7042864-7043140,7043751-7044231,
7044943-7045491,7045556-7045680,7045824-7045966
Length = 624
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +3
Query: 285 EVLSTEEIVQHMVDCIKEVNTVVEIPATTTRILLNHFKWDKEKLMERFYDGDQDQLFSEA 464
+V++ E ++ + +++V ++ + R LL H++WD E++ E +D+LFSEA
Sbjct: 89 QVITKESLLAAQREDLRKVMELLGLREHHARTLLIHYRWDVERIFELLDQKGRDRLFSEA 148
Query: 465 RV-INPFRKP 491
+ + P P
Sbjct: 149 GIPLQPANNP 158
>08_02_1429 +
27040293-27040523,27041618-27041739,27042290-27042392,
27042530-27042620,27042851-27043023,27043379-27043467,
27044212-27044319,27044408-27044498,27044708-27044797,
27045587-27045658,27045756-27045849,27045940-27046087,
27046961-27047222
Length = 557
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +3
Query: 195 ESSGDDVDFAMDVETHSTR--ERQTELEEYPYEVLSTEEIVQHMVDCIKEVNTVVEIPAT 368
E GD+ D E + E Y VL+ ++I + + I +V+ V+ I
Sbjct: 48 EEEGDEELVGGDYEGREAEGSDEVVSRREQRYIVLTEKDINERQEEDIGKVSAVLSIRRE 107
Query: 369 TTRILLNHFKWDKEKLMERFYDGDQ 443
+LL+H+KW+ KL + ++ ++
Sbjct: 108 EACVLLHHYKWNISKLSDEWFADEE 132
>09_06_0262 - 21921647-21922796,21922897-21923423
Length = 558
Score = 33.1 bits (72), Expect = 0.17
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 282 YEVLSTEEIVQHMVDCIKEVNTVVEIPATTTRILLNHFKWDKEKLMER-FYDGDQ 443
Y LS E++ V + IP +LL H+KW +L +R F DGD+
Sbjct: 71 YRNLSEEQVRARQDADTANVGELFAIPPGFAAVLLRHYKWSLVELQDRLFCDGDR 125
>06_03_0585 - 22528082-22530100
Length = 672
Score = 31.1 bits (67), Expect = 0.69
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 463 LELSIHSGNLSYKGQSFPGGYQRLVWKXCEIC 558
+E SI GNL+Y+GQ R+ + C IC
Sbjct: 329 IEQSIRDGNLAYEGQRLKFDLNRIRFSDCPIC 360
>06_03_0580 + 22489184-22491202
Length = 672
Score = 31.1 bits (67), Expect = 0.69
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 463 LELSIHSGNLSYKGQSFPGGYQRLVWKXCEIC 558
+E SI GNL+Y+GQ R+ + C IC
Sbjct: 329 IEQSIRDGNLAYEGQRLKFDLNRIRFSDCPIC 360
>12_01_0811 -
7440413-7440712,7441285-7441398,7441448-7441705,
7441825-7441998,7442344-7442514,7442607-7442874,
7443171-7443937,7444437-7445123
Length = 912
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 189 GNESSGDDVDFAMDVETHSTRERQTELEEYPYEV 290
GNE S D ++ + ST+ R E+E+YP +V
Sbjct: 237 GNEGSRSPFDSQREMPSSSTKVRSEEVEKYPIQV 270
>11_04_0035 -
12632439-12632728,12633000-12633093,12633118-12633573,
12633633-12633833
Length = 346
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 396 KWDKEKLMERFYDGDQDQLFSEARVINPFRKPVIQRPKLPRRISTSGME 542
KWD+ + +RFY+ + S+A +++ I R + P+ S ME
Sbjct: 153 KWDRHWMPKRFYNSIPFEAASDAAKAMKWQRRAIVRIRKPKVAIDSAME 201
>06_02_0357 - 15123688-15123768,15123843-15124065,15124401-15124450
Length = 117
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 399 WDKEKLMERFYDGDQDQLFSEARVINP 479
W +EK+M + DGD L S V++P
Sbjct: 21 WHREKIMVQEKDGDDRGLLSRMTVVSP 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,026,681
Number of Sequences: 37544
Number of extensions: 288261
Number of successful extensions: 808
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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