Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8c18
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    29   0.59 
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    28   1.0  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    27   2.4  
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe...    26   3.1  
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    26   4.1  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   7.2  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    25   7.2  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    25   7.2  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    25   9.5  

>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 317 LLVALLGVSMSACAFASQPV 376
           L VALLG+S+  C FAS P+
Sbjct: 132 LTVALLGMSLYVCGFASGPI 151


>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +2

Query: 239 QRHENHVDTINAVGENSHAAQIKMRALLVA-LLGVSMSACAFASQPVELELDDDDVTQKL 415
           +R  N  D I ++   +  + I+ RA L+     +     AFA  P+E+E  ++DV   L
Sbjct: 98  RRKVNENDFIKSLIRTAEGSSIEERAKLIEDSKELEALHAAFAGPPLEVEGSEEDVETDL 157

Query: 416 SNVSFARRITK 448
             + F +  +K
Sbjct: 158 HFICFVKGKSK 168


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -1

Query: 537 DITAISKSKDVTAVRNALDFPFPITSRIVGFV 442
           D TAI KS    +V N LD P P+T+ I  FV
Sbjct: 451 DFTAIVKSY-FESVDNPLDIPKPLTNTINKFV 481


>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 197 KMNSDSNFILNQIRQRHEN 253
           K NS+  ++LN IR RH+N
Sbjct: 162 KFNSNFAYLLNTIRTRHDN 180


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 334 QQGYQKSTHLDLSGMRILADRVYGIYMIFVSLTNLIQ 224
           ++ YQ+S H  +S +R +AD + G++    S T   Q
Sbjct: 232 KKSYQESEHPIVSSIRDMADSISGVWSRMFSETEASQ 268


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -3

Query: 475 ISNNKPDRGLRNSSSETDVTQFLRDVI--VVQL*LDWLRGKSAGRHRNSQQGY 323
           I NN+ +  LRN++S+ ++    ++ I   V+     L  KS   H NS+  Y
Sbjct: 841 IMNNRSEEFLRNAASQAEIVGANKERIQKTVENGSQLLDSKSKAIHSNSRSMY 893


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 466 YWKWKIQCISDGSDILAFTYRCD 534
           YWK KI C S GS+I    +  D
Sbjct: 117 YWKVKIVCRSMGSEIYDLCWSVD 139


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 223 FESD-SSETRKSCRYHKRGRREFACRSNQDACSSGSPAGSFYV 348
           F+ D SS+  K+ RYH R  R+ +   +     SGS  G   V
Sbjct: 637 FDLDFSSKPYKNLRYHSRALRDVSYHPSLPLFCSGSDDGDVQV 679


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 323 VALLGVSMSACAFASQPV 376
           VALLG+S+    FAS PV
Sbjct: 111 VALLGISLYVLGFASGPV 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,178,911
Number of Sequences: 5004
Number of extensions: 41532
Number of successful extensions: 113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)