Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8c18
         (543 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0482 - 14568108-14568284,14568912-14569970,14570532-145712...    28   5.5  
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           28   5.5  
01_01_0172 + 1485170-1485176,1485480-1485511,1485622-1485870,148...    28   5.5  
01_01_0664 - 5072416-5072500,5073383-5073585,5073693-5073823,507...    27   7.3  
01_06_1453 - 37465665-37466627                                         27   9.7  

>05_03_0482 -
           14568108-14568284,14568912-14569970,14570532-14571236,
           14571376-14571656,14571748-14571769
          Length = 747

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 223 FESDSSETRKSCRYHKRGRREFACRSNQDACSSGSPAGS 339
           F +  S  R+S    +  R EFAC S + +  SG+ AGS
Sbjct: 203 FITKISSCRRSQITKQYNRYEFACHSERSSRESGASAGS 241


>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 395 DDVTQKLSNVSFARRITKPTIRLVIGNGKS 484
           DDV +K++ + F+R   + T+R +  NG++
Sbjct: 525 DDVVEKVATMGFSREQVRATVRRLTENGQN 554


>01_01_0172 +
           1485170-1485176,1485480-1485511,1485622-1485870,
           1486350-1487813,1487906-1487959
          Length = 601

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 284 NSHAAQIKMRALLVALLGVSMSACAFASQPVELELDDDDVTQKLSNVSF 430
           + HA  +    LL  LLG  +        P++L  DDDD+   +++ SF
Sbjct: 215 HDHALGLTRANLLAGLLGAYVIEKPEVDTPMDLPCDDDDLHLVIADRSF 263


>01_01_0664 -
           5072416-5072500,5073383-5073585,5073693-5073823,
           5073876-5073930
          Length = 157

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -2

Query: 419 YSIFA*RHRRPTLTRLAARQKRRPT*KLPAGLPEE 315
           ++I   R RR  L+RLA    R+P  + PAGLP E
Sbjct: 82  HAILLPRRRRLLLSRLAT-SPRQPPPQPPAGLPRE 115


>01_06_1453 - 37465665-37466627
          Length = 320

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 256 CRYHKRGRREFACRSNQDACSSGSPA 333
           CR ++RG+   + RS  DA SSG  A
Sbjct: 74  CRKNRRGKSSSSARSAADAVSSGRDA 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,733,124
Number of Sequences: 37544
Number of extensions: 255220
Number of successful extensions: 693
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)