Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8c12
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.03c |bag102|bag1-b|BAG family molecular chaperone regula...    29   0.40 
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    28   0.92 
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    27   1.6  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    26   4.9  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.5  
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.5  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.6  

>SPBC530.03c |bag102|bag1-b|BAG family molecular chaperone
           regulator|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 206

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 458 QDVGDDDTNLEENVLGQEVEDDGVLLSPYPRSRLKR 565
           QDV D  T L E +L + ++ D V +   P +RLKR
Sbjct: 149 QDVQDLHTRLSETLLARMIKLDAVNVEDDPEARLKR 184


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 242  VFVKMFRSKIRIHTCRIILLTSLAWLLVDVMLLAMYSD 355
            VF++M    I I +  +++LTSLAW L ++ +   Y D
Sbjct: 1435 VFIEM--QYINIISIIVLVLTSLAWFLFNIFISEHYPD 1470


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 461 DVGDDDTNLEENVLGQEVEDDGVLLSPYPRSRLKRWQ 571
           D+G DDTN  E  + +    +  +LS     RLKR Q
Sbjct: 8   DIGKDDTNTSEADVSKNETQEQPVLSKSALKRLKRQQ 44


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +2

Query: 335 LLAMYSDCF-GDGCNQKTVTSE 397
           L + Y+ CF GDGC Q+ V+SE
Sbjct: 151 LFSNYTFCFLGDGCLQEGVSSE 172


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 343 SQQHN--VHQ*PSQGRQQDNTTRVNPYFTSEHFNEYTTGHWLLTISIQPN 200
           S QH+   H+   QG+ + +TT+   + T   + E++ G      S++PN
Sbjct: 129 SSQHDKAFHERVDQGKNKSSTTKYQEFRTVADYREFSPGQ--SVNSLKPN 176


>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 215 NCQKPVTRGVFVKMFRSKIRIHTCRIILLTSLAWLLVD 328
           +C+    RG+  K F +K ++   R++ LT+   LLV+
Sbjct: 18  DCETVNFRGIAYKCFFTKDQVKGTRLVRLTNYLMLLVN 55


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = -1

Query: 262 SEHFNEYTTGHWLL 221
           S+ +NEYT+G+WL+
Sbjct: 215 SDIWNEYTSGNWLM 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,277,303
Number of Sequences: 5004
Number of extensions: 42358
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)