Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8c07
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 32 0.086
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 31 0.20
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 30 0.35
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 30 0.35
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.46
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 29 0.61
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 29 0.80
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 27 3.2
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 27 3.2
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 26 4.3
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 26 4.3
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 26 4.3
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 26 5.6
SPBC1105.18c ||SPBC887.21c|peptide release factor|Schizosaccharo... 26 5.6
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 26 5.6
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 26 5.6
SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 26 5.6
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 26 5.6
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S... 26 5.6
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.5
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 25 7.5
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 25 7.5
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 25 9.9
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 31.9 bits (69), Expect = 0.086
Identities = 22/106 (20%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Frame = +3
Query: 324 EHIKKQEQFTTSSKWKIVNQDDGFNSKLQIQEIKKDVKETEK--ENELVFGKMYSDSEDD 497
E ++K+ T +I +D+ +N + + +E ++D++ + + + E K+ + E+
Sbjct: 23 ELLEKEHLRMTQQNAEIEKEDEEYNIEEE-EEAERDIEISSESSDEEAELKKLEEEGEEV 81
Query: 498 KPNVSEASPSGRAKSKKKH--NSDSDFSPPRRGNPVKRNNSPKKNY 629
+ + + + K +K N PP+R P + PKK Y
Sbjct: 82 EKILRDEERIKKRKIQKNRAANLQRTLQPPKRPTPSAASEVPKKKY 127
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 30.7 bits (66), Expect = 0.20
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Frame = +3
Query: 378 NQDDGFNSKLQIQEIKKDVKETEKENELVFGKMYSDSEDDKPNVSEAS-PSGRAKSKKKH 554
++DDG + + E +D E E MY D K +A+SK+K
Sbjct: 189 DEDDGIDLLMDPDENMED-SEDESNGPQADSIMYEDFFGPKTAAGRRELKKKKAESKRKR 247
Query: 555 NSDSDFSPPRRGNPVKRNNSPKKN 626
S DF + N ++ NN N
Sbjct: 248 TSKPDFKNDVQQNVIEENNESSDN 271
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 29.9 bits (64), Expect = 0.35
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +3
Query: 333 KKQEQFTTSSKWKIVNQDDGFNSKLQIQEIKKDVKETEKENE--LVFGKMYSDSEDDKPN 506
KK + F+ K + + + + KKD E E+E FG+ S++++ +
Sbjct: 30 KKVDSFSPKKKKNTTSSGSSESDSMSQNDKKKDSSLNESEDEDFAGFGESASENDELESA 89
Query: 507 VSEASPSGRAKSKKKHNSDS 566
SEA + S+K ++ +S
Sbjct: 90 ESEAENDEESSSQKSNSKES 109
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 29.9 bits (64), Expect = 0.35
Identities = 18/89 (20%), Positives = 38/89 (42%)
Frame = +3
Query: 360 SKWKIVNQDDGFNSKLQIQEIKKDVKETEKENELVFGKMYSDSEDDKPNVSEASPSGRAK 539
S +V++ D L + + +++T +E E VF + +D+ + N E
Sbjct: 354 SNLPVVDESDAIIGMLSLFHLATAIEQTPEEEEEVFDQAENDAGIEPSNGFEDQQQQLLG 413
Query: 540 SKKKHNSDSDFSPPRRGNPVKRNNSPKKN 626
+ + + D +PP NP+ N ++
Sbjct: 414 NSNEVVENYDVNPPLPLNPLPSNTQQSES 442
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.5 bits (63), Expect = 0.46
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = +3
Query: 420 IKKDVKETEKENELVFGKMYSDSEDDKPNVSEASPSGRAKSKKKHNSDSDFSPPRRGNPV 599
+KK VKET + + +KP+ S+ AK K +S +D SP +
Sbjct: 9 VKKSVKETASKKGAI----------EKPSKSKKITKEAAKEIAKQSSKTDVSPKKSKKEA 58
Query: 600 KRNNSPK 620
KR +SP+
Sbjct: 59 KRASSPE 65
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 29.1 bits (62), Expect = 0.61
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Frame = +3
Query: 333 KKQEQFTTSSKW-KIVNQDDGFNSKLQIQEIKKDVKETEKENELVFGKMYSDS-EDDKPN 506
+K+ + S KW +++ Q +G K Q +KK ++ EKE K SD+ ++ K N
Sbjct: 139 EKRRKIEESDKWHRVLLQAEGKKLKDNEQLLKKSIRRKEKEK-----KKSSDAWKERKDN 193
Query: 507 VSEASPSGRAKSKKKHNSDSDFSPPRRGNPVKRNNSPKK 623
+A + + ++ + ++G K+ KK
Sbjct: 194 EKKAMLMRQQRREENLKKRRESKKSKKGKAPKKKKPSKK 232
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 28.7 bits (61), Expect = 0.80
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Frame = +3
Query: 432 VKETEKENELVFGKMYSDSEDDKPNVS----EASPSGRAKSKKKHNSDSDFSPPRRGNP 596
+ E K +E V + + E KP + ASP+G ++ H + SD PP P
Sbjct: 270 IYEHSKPSETVKSEQETAVEHPKPTATTSAPSASPTGVPVEEESHKATSDAVPPAEAKP 328
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 468 GKMYSDSEDDKPNVSEASPSGRAKSKKKHNSDSDFS 575
G + S +KP+ S + S +KSKKK S S S
Sbjct: 361 GPAMAPSASNKPSASSTTKSSNSKSKKKVTSISGTS 396
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/81 (19%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +3
Query: 288 APQVAGIIDERPEHIKKQEQFTTSSKWKIVNQDDGFNSK--LQIQEIKKDVKETEKENEL 461
+P+ + + +H + E+ T++ KI + + ++ L++ K + ++K++E+
Sbjct: 661 SPENIEKLKQNDDHFEVTEEITSTINSKISEKQENNVAETILEVTSSPKSSENSQKQSEI 720
Query: 462 VFGKMYSDSEDDKPNVSEASP 524
K E+D+P+ +SP
Sbjct: 721 T--KKRGRDEEDEPSDLHSSP 739
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 498 KPNVSEASPSGRAKSKKKHNSDSD 569
KP E SP R + KH+ DS+
Sbjct: 152 KPEAKEPSPKSRKTDEDKHDKDSN 175
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 26.2 bits (55), Expect = 4.3
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Frame = +3
Query: 282 DDAPQVAGIIDERPEHIKKQEQ---FTTSSKWKIVNQDDGFNSKLQIQEIKKDVKETEKE 452
+D P+ ++ RP + QEQ S++++ + D + I KD K+++ +
Sbjct: 602 EDKPRHIPCLEARPSPNRIQEQPNIDVPSTRYENTSSSDAVS-------IHKDEKKSKGK 654
Query: 453 NELVFGKMYSDSEDDKPNVSEASPSGRAKSKKK 551
+ + GK+ S+ DK E P+ KKK
Sbjct: 655 SHKL-GKLMMSSKKDKDKSKEKVPTYGTSDKKK 686
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 26.2 bits (55), Expect = 4.3
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +3
Query: 378 NQDDGFNSKLQIQEIKKDVKETEKENE-LVFGKMYSDSEDDKPNVSEASPSGRA---KSK 545
N+D NS+LQ Q I+K +KE E L+ S S+ D + A S A +
Sbjct: 136 NKDSDRNSRLQ-QLIEKKRNALKKEQEDLIQNSATSHSKSDNLDSESADDSDLADESELS 194
Query: 546 KKHNSD 563
KK+ SD
Sbjct: 195 KKYTSD 200
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 25.8 bits (54), Expect = 5.6
Identities = 20/91 (21%), Positives = 35/91 (38%)
Frame = +3
Query: 297 VAGIIDERPEHIKKQEQFTTSSKWKIVNQDDGFNSKLQIQEIKKDVKETEKENELVFGKM 476
+AG+ E + +K ++WK + Q+ +L + ENE +
Sbjct: 409 LAGLPKENEDEVKSICGDILENRWKSLLQEISSQKQLSTDASQTQDASIANENETEIASL 468
Query: 477 YSDSEDDKPNVSEASPSGRAKSKKKHNSDSD 569
SE KP SP + +K N D++
Sbjct: 469 DEGSE-SKPT---PSPPAEQLTDQKQNEDNE 495
>SPBC1105.18c ||SPBC887.21c|peptide release
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 330 IKKQEQFTTSSKWKIVNQDDGFNSKLQIQEIKKDV 434
+KK++Q SK K N+ D +S L E K+DV
Sbjct: 127 VKKKKQREKKSKRKYGNKIDDQDSSLNNNEAKQDV 161
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +3
Query: 375 VNQDDGFNSKLQIQEIKKDVKETEKE--NELVFGKMYSD 485
VN D +SK Q++E++ ++ EKE + LV K SD
Sbjct: 482 VNNDANEDSKKQVEELRLQLQNLEKEHASTLVTLKQKSD 520
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +3
Query: 525 SGRAKSKKKHNSDSDFSPPRRGNPVKRNNSPKKNY 629
+G A + HN+D P G P + +S +++Y
Sbjct: 314 TGPANANANHNTDLSHDPTSHGGPRRTLSSRRQHY 348
>SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 77
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 420 IKKDVKETEKENELVFGKMYSDSEDDKPNVSEASPSGRAKSKKKHNSDSD 569
I++ V E EKE E+ K+Y+ D + EA + KK N + +
Sbjct: 24 IRRKVSEIEKECEMYAVKIYNVERDIQRYRHEAQLLSKVLEKKGLNKEKE 73
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = +3
Query: 324 EHIKKQEQFTTSSKWKIVNQDDGFNSKLQIQE--IKKDVKETEKENELVFGKMYSDSEDD 497
+H + + F ++ + K + + ++LQ E +KE ENEL ++ + +
Sbjct: 273 QHQAELQDFASNIEQKANSLIMEYKNELQSAEEHFSHKIKELTSENELKISRLQEEKDSL 332
Query: 498 KPNVSEASPSGRAKSKKKHN 557
V E + + + KH+
Sbjct: 333 LKKVQEGASLAMQRVQNKHD 352
>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 495 DKPNVSEASPSGRAKSKKKHNSDSDFSPPRRGNPVKRNNSPKK 623
D+ E+S S S + +SDS+FS P++ V N KK
Sbjct: 311 DQKEGDESSSSDNLDSDEDSSSDSEFSSPKKKKKV--GNQGKK 351
>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 7.5
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Frame = +3
Query: 384 DDGFNSKLQIQEIKKDVKETE------KENELVFGKMYSDSEDDKPNVSEASPSGRAKSK 545
+D N+K +++EI+K ETE N L FG + +E +++ PS K
Sbjct: 82 EDMENTKKELEEIRKQSTETELRYLKSLSNTLSFGTLSLSNE-----INKVGPSASFMLK 136
Query: 546 KKHNS 560
+ H+S
Sbjct: 137 EVHDS 141
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.4 bits (53), Expect = 7.5
Identities = 20/79 (25%), Positives = 32/79 (40%)
Frame = +3
Query: 375 VNQDDGFNSKLQIQEIKKDVKETEKENELVFGKMYSDSEDDKPNVSEASPSGRAKSKKKH 554
+N D S+ + + + E++ +ED + NVS+ SP G S +
Sbjct: 333 INADSSAGSEGVDEGTSTEANDESSEDDDEDNNTDEANEDAQSNVSDESPKGEGSSHSDN 392
Query: 555 NSDSDFSPPRRGNPVKRNN 611
SD GN VK+ N
Sbjct: 393 VVLSD------GNSVKKMN 405
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.4 bits (53), Expect = 7.5
Identities = 22/83 (26%), Positives = 29/83 (34%)
Frame = +3
Query: 372 IVNQDDGFNSKLQIQEIKKDVKETEKENELVFGKMYSDSEDDKPNVSEASPSGRAKSKKK 551
+ N +D N + Q + KD TE +S K V SPS KS
Sbjct: 421 LANAED--NKTFEHQPLSKD---TEAPKSQFSSSPTKESTTRKSEVEPPSPSKEIKSSHF 475
Query: 552 HNSDSDFSPPRRGNPVKRNNSPK 620
+ F P K+ N PK
Sbjct: 476 SVPEFKFEPKTEATTDKKLNVPK 498
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 327 HIKKQEQFTTSSKWKIVNQDDGFNSKLQIQEIKK-DVKETEK 449
HIKKQ++ + + D ++ LQI E++K +E EK
Sbjct: 442 HIKKQDKRRLGTDPSTLESDIAEDAALQIDEVRKISDEEVEK 483
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,026,313
Number of Sequences: 5004
Number of extensions: 33486
Number of successful extensions: 175
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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