Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8c06
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_03_0028 + 7184825-7184837,7185449-7185771,7186052-7186069           30   2.0  
02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003...    29   2.6  
02_02_0640 - 12528075-12528363,12531326-12532311                       28   6.0  
07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371     28   7.9  
07_03_1457 - 26674128-26674783,26675741-26675962,26676065-26676362     28   7.9  
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805...    28   7.9  

>10_03_0028 + 7184825-7184837,7185449-7185771,7186052-7186069
          Length = 117

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +1

Query: 121 IDVGSGTETGSVMASTEWPITRTKRNFPFQL*DS-KKTPKISGPCARKRREIGNSSAAKR 297
           ++V   TE  +  A++ +  T    NF F L      TP +   C  K  ++   SA   
Sbjct: 8   VEVACETEGPNTQANSVFTATDEFGNFTFHLPSRLHATPSLENACVVKVLQLPPDSACGL 67

Query: 298 RKRYIVLLSVRPSPNFST 351
           R R      +RPS + S+
Sbjct: 68  RHRPAASYRIRPSSSLSS 85


>02_05_0046 -
           25398412-25398594,25399022-25399060,25399896-25400360,
           25400758-25400816,25400920-25401748,25402554-25402898,
           25402973-25403435,25403537-25403640,25403692-25403901,
           25404933-25405088,25405774-25406052,25406237-25406986,
           25407141-25407232,25407977-25408361,25408672-25408752,
           25409196-25409354,25409399-25409506,25409604-25409666,
           25409764-25409835,25409932-25410366
          Length = 1758

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 247 PCARKRREIGNSSAAKRRKR 306
           P ARKRR++ + S +K+RKR
Sbjct: 879 PAARKRRKVNSGSTSKKRKR 898


>02_02_0640 - 12528075-12528363,12531326-12532311
          Length = 424

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 323 ERSTI*RFLLFAAEEFPISLLFLAQGPDIFGVFFESHSW 207
           ER  +    + +AE+  ++ +F+  G DIF   F S+SW
Sbjct: 299 ERERLGPVAVISAEDGRVTEVFMLDGHDIFRYNFSSNSW 337


>07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371
          Length = 437

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 185 GRSAISLSSCEIQRKHQRYLGLARER-EGRLETPLLRREESVISCFFLSDLRRISALYRR 361
           GRS    SSC+ Q+KH    G  R R E    +P + ++   +   F S ++ +S +   
Sbjct: 210 GRSLDVASSCKRQKKHSN--GTKRSRTESNFPSPRMLKD---VHSHFQSSIQHVSTMVTA 264

Query: 362 ME 367
           ME
Sbjct: 265 ME 266


>07_03_1457 - 26674128-26674783,26675741-26675962,26676065-26676362
          Length = 391

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = +3

Query: 312 RASFCQTFAEFQHYTGEW---KLILGYLLIALSFPFW 413
           R+ + +TF  F+  TG W   +LI+ +++  L FP+W
Sbjct: 74  RSPYGETF--FRRPTGRWSDGRLIVDFIVERLGFPYW 108


>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
            8057595-8058314,8058404-8058603,8058988-8059172,
            8059287-8059354,8059432-8060246,8060502-8060599,
            8060702-8060887,8061358-8061538,8061651-8061812,
            8061894-8061937,8062059-8062115,8062409-8062505,
            8062614-8062786,8062868-8063081,8063270-8063395,
            8064072-8064188,8064459-8064566,8064729-8064898,
            8065049-8065127,8065211-8065285,8065845-8065942,
            8066030-8066137,8066238-8066295,8066527-8066631,
            8067461-8069516,8069804-8070697,8070896-8071852,
            8072022-8072075,8072157-8072222,8072294-8073472,
            8073868-8075598,8075764-8075829,8076763-8077788,
            8077893-8078041
          Length = 4264

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 508  YASTQ*TDYRLNGTMITTDGSNKKCFGTNDPPEKGNIITF 627
            +AST+    R++GT   + G N KC  TND  +  N++ +
Sbjct: 4002 FASTK-DQGRVDGTSNLSGGDNAKCSLTNDDSQTVNLVGY 4040


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,836,277
Number of Sequences: 37544
Number of extensions: 383453
Number of successful extensions: 1109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)