Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8c06
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       25   0.51 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   4.7  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   4.7  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   4.7  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   6.3  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   6.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.3  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +3

Query: 318 SFCQTFAEFQHYTGEWKLILGYLLIALSFPFWAMIFNHYYVYEPLPESLSKESQKAQLRR 497
           S C TF  F  YT E    L  +++   FP   +I+ +  +   +    SK+S+  ++RR
Sbjct: 187 SQCVTFNAFPTYTHEITYSLFGMIMMYWFPLVVIIYTYTSILLEI-RRRSKKSEDDKIRR 245


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/50 (22%), Positives = 26/50 (52%)
 Frame = -1

Query: 616 YFPSQEDRLSRNTFYCFHRSLS*SHLDDNPSIGLTRNSSILLN*AFCDSL 467
           +F S+  +  + ++ C ++S+  SHL  + ++   R ++      +C SL
Sbjct: 11  HFGSKPFKCEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYCHSL 60


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +3

Query: 465 SKESQKAQLRRMLELRVNPIDGLSSKWDYDNDRWKQ*KVFRDKRSS*EGKYNYVSSI 635
           SKE  + +  R        I  LS+ ++Y+N+ +K  K++ +         NY+  I
Sbjct: 63  SKERSRDRKEREKSKEHKIISSLSNNYNYNNNNYK--KLYCNNYKKLYYNINYIEQI 117


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +3

Query: 465 SKESQKAQLRRMLELRVNPIDGLSSKWDYDNDRWKQ*KVFRDKRSS*EGKYNYVSSI 635
           SKE  + +  R        I  LS+ ++Y+N+ +K  K++ +         NY+  I
Sbjct: 63  SKERSRDRKEREKSKEHKIISSLSNNYNYNNNNYK--KLYCNNYKKLYYNINYIEQI 117


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 465 SKESQKAQLRRMLELRVNPIDGLSSKWDYDNDRWKQ 572
           SKE  + +  R        I  LS+ ++Y+N+ +K+
Sbjct: 63  SKERSRDRKEREKSKEHKIISSLSNNYNYNNNNYKK 98


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 465 SKESQKAQLRRMLELRVNPIDGLSSKWDYDNDRWK 569
           SKE  + +  R        I  LS+ ++Y+N+ +K
Sbjct: 296 SKERSRDRTERERSKERKIISSLSNNYNYNNNNYK 330


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 308 ISCFFLSDLRRISALYR 358
           + CF   D+   SALYR
Sbjct: 23  VICFVCKDITSTSALYR 39


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 583 FGTNDPPEKG 612
           FG  DPPE G
Sbjct: 524 FGNGDPPENG 533


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,106
Number of Sequences: 438
Number of extensions: 4610
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)