Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8c02
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0313 + 20751466-20751495,20752004-20752507                       32   0.45 
05_06_0102 - 25589011-25589181,25589269-25589496,25589589-255899...    27   9.6  
04_04_1677 + 35306232-35306328,35306697-35307248,35307324-353076...    27   9.6  

>01_05_0313 + 20751466-20751495,20752004-20752507
          Length = 177

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 394 QGILSYDDAHSE-INSERPIGDDDVRNIFIDNNDNQMYITTGTNHE 528
           +G+   D  HSE +  ++P+ +   + + +D ND   YI  G N E
Sbjct: 121 KGVHVVDQKHSEYLKMQKPVPEGKTKKVLLDENDLGKYILLGENLE 166


>05_06_0102 -
           25589011-25589181,25589269-25589496,25589589-25589933,
           25590406-25590777,25590957-25591049,25591150-25591401,
           25592019-25593224
          Length = 888

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
 Frame = +1

Query: 106 SIATNTLADKCETIKIGNEFYKRQLIATIDGYPTGM-AVDPKTDNLFFLLHKRNYTKGIH 282
           ++A   L     +     EF+   L+ TI G+  G+ A D   D+ F L   ++ T  + 
Sbjct: 110 AVAVGKLVQIWRSPAFRKEFFPFHLLRTIPGFAAGVTAFDWSPDSSFLLASCKDLTARLL 169

Query: 283 ILKRGSLGVKLLPISD--DVIGQCVAID 360
            +K+G  G   L +     V+G   A D
Sbjct: 170 PVKKGLGGKPFLFVGHRAAVVGAFFATD 197


>04_04_1677 +
           35306232-35306328,35306697-35307248,35307324-35307608,
           35308035-35308296,35308378-35308430,35308520-35308587,
           35310331-35310420,35310502-35310586,35310822-35311254,
           35312872-35313439,35313527-35314000
          Length = 988

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 325 SDDVIGQCVAIDTVNNIIYIGTNQGILSYDD 417
           SDD +G  V  + V   + + T QGI SYDD
Sbjct: 173 SDDNVGLSVCRNAV--FVTLATQQGIFSYDD 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,358,450
Number of Sequences: 37544
Number of extensions: 294623
Number of successful extensions: 599
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)