Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8b21
         (156 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   4.1  
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    23   5.4  
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    23   5.4  
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    23   7.2  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    23   7.2  
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    23   7.2  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    22   9.5  

>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +2

Query: 23  TVSDNVQDMALGKTRPVSGVKVGGNSEAVS---GKEGFY-HGGQGS 148
           T SDN+  +  GK+ PV+ V      +  S    ++GFY   G+G+
Sbjct: 280 TESDNICGLTAGKSDPVTDVDESQTIDEQSIPEAEKGFYTKDGEGT 325


>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 56  GKTRPVSGVKVGGNSEAVSGKEGFYHGGQG 145
           G ++  S  +  G+ +   G  GFY GG+G
Sbjct: 347 GSSKRPSVNRSQGSGQRGRGGRGFYRGGRG 376


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 46  YGVGKNKASQWCQGGRK*RSCIRKRR 123
           +GVG + A++W Q G +    +RK +
Sbjct: 270 FGVGASHAAEWYQKGWRTIEQVRKHK 295


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
          Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 65 LFFPTPYPEH 36
          + FPTPY EH
Sbjct: 17 ILFPTPYEEH 26


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +3

Query: 36  MFRIWRWEKQGQSVVSRWAEIAKLY 110
           M ++   +K+G +++ RW     LY
Sbjct: 839 MLKVLSSQKEGHAIMERWRIFTTLY 863


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 103 FAISAHLDTTDWPCFSQRH 47
           F ISA++DT+D P    +H
Sbjct: 206 FNISAYVDTSDLPILFIKH 224


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 110  SGKEGFYHGGQG 145
            SG +G YHGG G
Sbjct: 1166 SGGKGEYHGGDG 1177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 627,438
Number of Sequences: 5004
Number of extensions: 9347
Number of successful extensions: 33
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 32
effective length of database: 2,202,350
effective search space used: 41844650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)