Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8b21
         (156 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0972 + 21347212-21347284,21347966-21348009,21348153-213482...    29   0.68 
03_04_0109 + 17354914-17355250,17355812-17355903                       27   2.1  
06_01_0944 + 7264833-7265120,7265511-7265600,7265702-7265798,726...    26   4.8  
01_01_0103 - 773727-774737,774797-774813,774852-775078,777465-77...    25   6.3  
08_02_1269 + 25755256-25756203                                         25   8.3  
06_03_1326 - 29355467-29355817                                         25   8.3  
05_07_0126 + 27869058-27869805,27869988-27870328,27870430-278705...    25   8.3  
03_02_0425 + 8353009-8354703                                           25   8.3  
01_06_0727 - 31517592-31518600,31519999-31520225                       25   8.3  
01_01_0114 - 851249-852372,852577-852740,852838-853568                 25   8.3  

>04_03_0972 +
           21347212-21347284,21347966-21348009,21348153-21348237,
           21348810-21349358,21350291-21350416,21350772-21350936,
           21351243-21351310,21351529-21351618,21351740-21351830,
           21352214-21352812
          Length = 629

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +2

Query: 89  GGNSEAVSGKEGFYHGG 139
           GG + AV+G+EG+Y+GG
Sbjct: 553 GGLARAVAGEEGYYYGG 569


>03_04_0109 + 17354914-17355250,17355812-17355903
          Length = 142

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 5   FSRSKGTVSDNVQDMALGKTRPVSGVKVGGNSEAVSGKEGFYHGGQG 145
           F R  G    N+++M  G+     G+ V       S   GF HGG+G
Sbjct: 97  FHRGDGN-GKNLEEMFAGRCMVFDGMMVRRRVAVRSRGRGFVHGGRG 142


>06_01_0944 +
           7264833-7265120,7265511-7265600,7265702-7265798,
           7265927-7265988,7266508-7266596,7266702-7266822,
           7266915-7267058,7267492-7267820,7268154-7268394,
           7269042-7269245,7271150-7271619,7272703-7272746,
           7273121-7273211,7273494-7273596,7273682-7273783,
           7274214-7274300,7274421-7274531
          Length = 890

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 49  GVGKNKASQWCQGGRK*RSCIRKRRLLSWG 138
           GVG   A+   +G R+ R   R R LL WG
Sbjct: 24  GVGAAAATSVLRGRRRRRGLRRPRGLLGWG 53


>01_01_0103 -
           773727-774737,774797-774813,774852-775078,777465-778237
          Length = 675

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +3

Query: 96  IAKLYPEKKAFIMGDRAL 149
           +AKLYP +K+F+  DRAL
Sbjct: 493 LAKLYPREKSFV-SDRAL 509


>08_02_1269 + 25755256-25756203
          Length = 315

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 8   SRSKGTVSDNVQDMALGKTRPVSGV-KVGGNSEAVSGKEGFYHGGQGSH 151
           S+S   V+DN+ +  LG +RP  GV    G+   V G + F   GQ  H
Sbjct: 123 SKSAADVADNLYNSFLGGSRP--GVYHPFGDDVTVVGIDFFIDRGQPDH 169


>06_03_1326 - 29355467-29355817
          Length = 116

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +2

Query: 74  SGVKVGGNSEAVSGKEGFYHGGQG 145
           SG   GG   A  GK G YHGG G
Sbjct: 60  SGGHAGGGGGA--GKSGGYHGGGG 81


>05_07_0126 +
           27869058-27869805,27869988-27870328,27870430-27870510,
           27870978-27871073,27871152-27871307,27871575-27871721
          Length = 522

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 119 EGFYHGGQGSHL 154
           E FYHGG GS+L
Sbjct: 17  ESFYHGGAGSNL 28


>03_02_0425 + 8353009-8354703
          Length = 564

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 57  EKQGQSVVSRWAEIAKLYPEKKAFIMGDR 143
           E Q     +RW    ++ P+ +AFI+G R
Sbjct: 156 ETQDALAANRWYATNQILPDGRAFIVGGR 184


>01_06_0727 - 31517592-31518600,31519999-31520225
          Length = 411

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 71  VSGVKVGGNSEAVSGKEGFYHGGQ 142
           V+G  VGG  E   G+EG   GG+
Sbjct: 14  VAGAAVGGKKEEGEGEEGGVCGGE 37


>01_01_0114 - 851249-852372,852577-852740,852838-853568
          Length = 672

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 96  IAKLYPEKKAFIMGDRAL 149
           +AKLYP  K+F+  DRAL
Sbjct: 498 LAKLYPRNKSFV-SDRAL 514


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,517,788
Number of Sequences: 37544
Number of extensions: 81189
Number of successful extensions: 289
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 14,793,348
effective HSP length: 32
effective length of database: 13,591,940
effective search space used: 258246860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)