Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8b21
(156 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57437| Best HMM Match : GalP_UDP_transf (HMM E-Value=5.7) 29 0.59
SB_51564| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.0
SB_35360| Best HMM Match : rve (HMM E-Value=0.014) 27 2.4
SB_51555| Best HMM Match : ATP-cone (HMM E-Value=3.3) 27 3.2
SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.2
SB_6855| Best HMM Match : MSF1 (HMM E-Value=1.6e-10) 26 4.2
SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.3
SB_45877| Best HMM Match : Borrelia_orfA (HMM E-Value=0.23) 25 7.3
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.3
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 25 9.7
SB_7487| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.7
>SB_57437| Best HMM Match : GalP_UDP_transf (HMM E-Value=5.7)
Length = 183
Score = 29.1 bits (62), Expect = 0.59
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +3
Query: 12 GLRVLLATMFRIWRWEKQGQSVVSRWAEIAKLYPEKKAFIMGDRALTF 155
G LL+ R+W W + ++RW + L E + GD + F
Sbjct: 123 GSFTLLSFAKRVWAWVTKESGTIARWERTSSLMQEDQGSNPGDVNVVF 170
>SB_51564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 21 VLLATMFRIW-RWEKQGQSVVSRWAEIAKLYP 113
V +A FRI RWE GQS ++R+ + +YP
Sbjct: 28 VTMAPQFRIIARWE--GQSAINRYKQFVNIYP 57
>SB_35360| Best HMM Match : rve (HMM E-Value=0.014)
Length = 247
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 60 KQGQSVVSRWAEIAKLYPEKKAFIM 134
KQ +++V+RW AKL PE++ +M
Sbjct: 122 KQIEAMVNRWQTCAKLRPERREPLM 146
>SB_51555| Best HMM Match : ATP-cone (HMM E-Value=3.3)
Length = 491
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 20 GTVSDNVQDMALGKTRPVSGVKVGGNSEAVSGKEGF--YHGGQGSHL 154
G +DN Q M G + G GG+ + ++G G + GG G+ L
Sbjct: 316 GAATDNYQSMMGGGSMQSLGGDAGGSMQGLAGGGGIQSFGGGGGADL 362
>SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 577
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 2 GFSRSKGTVSDNVQDMALGKTRPVSGVKVGGNSEAVSGKE 121
G SRS VS D + GK+ V+ V N++ SGK+
Sbjct: 437 GVSRSSSRVSVKNGDRSNGKSSMVTVVATVNNTDTESGKQ 476
>SB_6855| Best HMM Match : MSF1 (HMM E-Value=1.6e-10)
Length = 289
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3
Query: 94 SAHLDTTDWPCFSQRHILNIVA 29
S H D DW CF Q L+I A
Sbjct: 31 SVHPDNPDWTCFEQDASLDIKA 52
>SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 8 SRSKGTVSDNV-QDMALGKTRPVSGVKVGGNSEAVSGKEG 124
S KG DN DMAL R + + V +S ++SG G
Sbjct: 243 SNPKGNPGDNSPMDMALKSDRDMQAINVPRSSYSISGLLG 282
>SB_45877| Best HMM Match : Borrelia_orfA (HMM E-Value=0.23)
Length = 734
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +2
Query: 2 GFSRSKGTVSDNVQDMALGKTRPVSGVKVGGNSEAVSGKE 121
G +S G ++DN+QD+A + S ++ N++A+S E
Sbjct: 208 GSGKSVGELNDNLQDIAKELSNLKS--QINNNNDAISSTE 245
>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3408
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +1
Query: 19 GYC*RQCSG--YGVGKNKASQWCQGGRK*RSCIRKRRLLSWGT 141
G C Q +G Y G N S+W GG + I +R L+ T
Sbjct: 231 GICCDQSNGLIYAYGNNWVSEWALGGIPNMNSIEERLCLTENT 273
>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
Length = 2442
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3
Query: 85 LDTTDWPCFSQRHILNIVANSTLRPR 8
L +T W CF +R+ + + A S P+
Sbjct: 822 LVSTGWDCFRERYFVRLKALSDFSPK 847
>SB_7487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +2
Query: 20 GTVSDNVQDMALGKTRPVSGVKVGGNSEAVSGKEGFYHGGQ 142
G + ++Q + TRP+ + +GG + F+ GG+
Sbjct: 53 GLIFQHLQGTIISHTRPLPRIFLGGGGQNQKKWPKFFRGGE 93
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,828,067
Number of Sequences: 59808
Number of extensions: 73281
Number of successful extensions: 243
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 16,821,457
effective HSP length: 31
effective length of database: 14,967,409
effective search space used: 299348180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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