Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8b21
         (156 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025471-3|AAB71061.1|  183|Caenorhabditis elegans Hypothetical ...    27   2.4  
AF016428-1|AAO26001.1|  330|Caenorhabditis elegans Serpentine re...    27   2.4  
Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical pr...    26   3.1  
Z70268-6|CAA94221.2| 1243|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z70265-4|CAA94203.2| 1243|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AC006674-3|AAF39932.2|  276|Caenorhabditis elegans Hypothetical ...    25   5.5  
Z70753-9|CAA94765.1|  502|Caenorhabditis elegans Hypothetical pr...    25   7.3  
U21317-2|AAA62531.3|  729|Caenorhabditis elegans Hypothetical pr...    25   7.3  
U21308-2|AAB93313.3|  507|Caenorhabditis elegans Hypothetical pr...    25   7.3  
AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    25   7.3  
Z83105-2|CAB05483.1|  434|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U50135-3|AAA93454.1|  329|Caenorhabditis elegans Squashed vulva ...    25   9.6  

>AF025471-3|AAB71061.1|  183|Caenorhabditis elegans Hypothetical
           protein R52.5 protein.
          Length = 183

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 77  GVKVGGNSEAVSGKEGFYHGGQG 145
           G+K  GN++A+ G +G Y G +G
Sbjct: 153 GIKDYGNTQAILGADGSYDGKKG 175


>AF016428-1|AAO26001.1|  330|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 66 protein.
          Length = 330

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 118 FSGYSFAISAHLDTTDWPCFSQR-HILNIVANSTLRP 11
           F G +FA+ + L TT W  F+   HILN     T  P
Sbjct: 143 FCGLAFALYSFLPTTIWFGFTNEVHILNDTLMRTRNP 179


>Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical
           protein C08B11.3 protein.
          Length = 1244

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 24  LLATMFRIWRWEKQGQSVVSRWAEIAKLYPEKKAFIMGDRAL 149
           L  T+  +  W+K   S   +W++IA+++  K   + GD A+
Sbjct: 61  LYDTVMALGGWQKVAAS--DKWSDIAEMFGCKDDILCGDHAI 100


>Z70268-6|CAA94221.2| 1243|Caenorhabditis elegans Hypothetical protein
            T21E8.3 protein.
          Length = 1243

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 23   TVSDNVQ-DMALGKTRPVSGVKVGGNSEAVSGKEGFYHGGQG 145
            TV D+V   +  GKT  + G    G S  +S  E FY   QG
Sbjct: 1018 TVLDSVNLKVEAGKTLAIVGPSGSGKSTIISLLEMFYRADQG 1059


>Z70265-4|CAA94203.2| 1243|Caenorhabditis elegans Hypothetical protein
            T21E8.3 protein.
          Length = 1243

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 23   TVSDNVQ-DMALGKTRPVSGVKVGGNSEAVSGKEGFYHGGQG 145
            TV D+V   +  GKT  + G    G S  +S  E FY   QG
Sbjct: 1018 TVLDSVNLKVEAGKTLAIVGPSGSGKSTIISLLEMFYRADQG 1059


>AC006674-3|AAF39932.2|  276|Caenorhabditis elegans Hypothetical
           protein K12H6.2 protein.
          Length = 276

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 48  WRWEKQGQSVVSRWAEIA-KLYPEKKAFIMGDRAL 149
           W WE  G  V+ +W +   +L+ E  A ++ D  L
Sbjct: 136 WEWEYCGSDVIKQWCDKGDRLFFEMNANLIIDATL 170


>Z70753-9|CAA94765.1|  502|Caenorhabditis elegans Hypothetical
           protein F40F9.10 protein.
          Length = 502

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 30  ATMFRIWRWEKQGQSVVSRWAEI 98
           A M RI +W  QGQ++V  +A +
Sbjct: 181 AEMKRISKWSCQGQTIVDMYASL 203


>U21317-2|AAA62531.3|  729|Caenorhabditis elegans Hypothetical
           protein B0495.5 protein.
          Length = 729

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 54  WEKQGQSVVSRWAEIAKLYPEKKA 125
           W+K+G+S+  R A+I KL   + A
Sbjct: 161 WKKEGESLKQRGAQIIKLLQPETA 184


>U21308-2|AAB93313.3|  507|Caenorhabditis elegans Hypothetical
           protein ZK1290.6 protein.
          Length = 507

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 89  GGNSEAVSGKEGFYHGGQGSH 151
           GG+     G  G  HGG GSH
Sbjct: 53  GGSHGGHGGSHGGSHGGHGSH 73


>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
           family protein 4 protein.
          Length = 960

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 54  WEKQGQSVVSRWAEIAKLYPEKKAFIMG 137
           W+K+ QS +  W +I K +PE   F+ G
Sbjct: 743 WDKR-QSELFYWRDILKEFPEFDMFLSG 769


>Z83105-2|CAB05483.1|  434|Caenorhabditis elegans Hypothetical
           protein F14H3.2 protein.
          Length = 434

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 80  VKVGGNSEAVSGKEGFYHGG 139
           +KV  NS  V G+E FY GG
Sbjct: 398 MKVEQNSLLVCGREKFYEGG 417


>U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical
           protein B0432.7 protein.
          Length = 621

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 47  MALGKTRPVSGVKVGGNSEAVSGK 118
           MA+ +T  +S  K+G NSE VS K
Sbjct: 382 MAIAETSGISSQKLGENSEHVSLK 405


>U50135-3|AAA93454.1|  329|Caenorhabditis elegans Squashed vulva
           protein 7 protein.
          Length = 329

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 109 YSFAISAHLDTTDWPCFSQRHILNIVANSTL 17
           YSF +S  + ++ W CF    I   V N +L
Sbjct: 215 YSFMLSDSMTSSVWTCFLLSCICGFVLNYSL 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,486,688
Number of Sequences: 27780
Number of extensions: 54995
Number of successful extensions: 203
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 12,740,198
effective HSP length: 32
effective length of database: 11,851,238
effective search space used: 225173522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)