Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8b19
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7549| Best HMM Match : TraB (HMM E-Value=6.79994e-41)              140   1e-33
SB_10015| Best HMM Match : DEAD (HMM E-Value=2.2e-34)                  29   3.8  
SB_55005| Best HMM Match : DUF1458 (HMM E-Value=1.8)                   28   6.7  
SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)          28   6.7  

>SB_7549| Best HMM Match : TraB (HMM E-Value=6.79994e-41)
          Length = 478

 Score =  140 bits (338), Expect = 1e-33
 Identities = 64/149 (42%), Positives = 101/149 (67%)
 Frame = +3

Query: 246 LPKSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVKILNPNGILVELCRQRVSXXXXXX 425
           LP++ T L+  +   V ++GT HFSK+S EDV++ ++ + P+ +LVELC+ R+       
Sbjct: 145 LPETVTKLETPEGCVVYVIGTAHFSKESQEDVAKTIQAVQPDRVLVELCKSRIDILKYDE 204

Query: 426 XXXXXXAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGVAPGGEFRRAYHEMQ 605
                 AKN D +KLK A+K   +V G++  +LL   A I ++LG+APGGEFR AY E +
Sbjct: 205 EFLLREAKNIDMQKLKLAIKQSGVVGGIMQVLLLSMSAHITQQLGMAPGGEFRAAYREAR 264

Query: 606 KIPGCKLYLGDRPIQITIARAFQSLSVYE 692
           K+ GC+++LGDRPIQ+T++RA  +L+V++
Sbjct: 265 KL-GCQVHLGDRPIQVTLSRAMAALTVWQ 292


>SB_10015| Best HMM Match : DEAD (HMM E-Value=2.2e-34)
          Length = 629

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = +3

Query: 537 ADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGSSPVSH 716
           + +  + G  P     +A H +Q I  C+L   +R  QI      +   V E GSS   H
Sbjct: 115 SQLKSQFGAFPASTASKARHIVQTI--CQLSQPERVSQILTRNKTKPKEVTEFGSSIPFH 172

Query: 717 FN 722
           FN
Sbjct: 173 FN 174


>SB_55005| Best HMM Match : DUF1458 (HMM E-Value=1.8)
          Length = 302

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 168 TAKPNTVQTYYSQKVLLRKKSDVSQHLPKSATLLQNDKQATVVLLGTVHFSKQSIEDVSE 347
           T K N  ++Y + + L +    V QHLPKS       + A +V L +V       ++ +E
Sbjct: 78  TPKSNNKKSYKTPQALGKAVGKVKQHLPKS----PGKRNAVIVKLASVAGVPPDAKNTNE 133

Query: 348 IV 353
           +V
Sbjct: 134 LV 135


>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
          Length = 1214

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 708 QDLTPARRHLATEKLVLLLFESVDLRDT-IYIQE 610
           +DLTP++   A    +L LF S+ +R+T IY +E
Sbjct: 702 EDLTPSKEQRARSSSLLSLFASIKVRETAIYRKE 735


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,001,370
Number of Sequences: 59808
Number of extensions: 437165
Number of successful extensions: 872
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)