Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8b19
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70854-4|AAP40536.1|  452|Caenorhabditis elegans Hypothetical pr...   123   1e-28
U70854-3|AAP40537.1|  450|Caenorhabditis elegans Hypothetical pr...   123   1e-28
AF068717-4|AAC17764.2|  357|Caenorhabditis elegans Serpentine re...    32   0.48 
Z19158-5|CAJ76965.1|  237|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z19158-4|CAJ76964.1|  719|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U23529-1|AAK39160.1|  269|Caenorhabditis elegans Hypothetical pr...    31   1.1  

>U70854-4|AAP40536.1|  452|Caenorhabditis elegans Hypothetical
           protein F38A5.2a protein.
          Length = 452

 Score =  123 bits (296), Expect = 1e-28
 Identities = 55/136 (40%), Positives = 86/136 (63%)
 Frame = +3

Query: 285 ATVVLLGTVHFSKQSIEDVSEIVKILNPNGILVELCRQRVSXXXXXXXXXXXXAKNFDSK 464
           +T+ L+GT HFSK+S EDVS  ++ + P+ +++ELC  R+S            AK+ +S+
Sbjct: 156 STIYLIGTAHFSKESQEDVSNTIRAVQPDFVMLELCPSRISIISMDEARLLSEAKDLNSQ 215

Query: 465 KLKQAVKGQNLVTGMLHAMLLKTYADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRP 644
           K+ Q +K    + G+LH +LL   A + +EL +APGGEFR A+        C++ LGDRP
Sbjct: 216 KIIQTMKQNGAIQGILHVLLLSMSAHVTRELSMAPGGEFRAAHRAAVATENCRVVLGDRP 275

Query: 645 IQITIARAFQSLSVYE 692
           IQ+T+ RA  SLS+++
Sbjct: 276 IQVTLQRALASLSIWQ 291


>U70854-3|AAP40537.1|  450|Caenorhabditis elegans Hypothetical
           protein F38A5.2b protein.
          Length = 450

 Score =  123 bits (296), Expect = 1e-28
 Identities = 55/136 (40%), Positives = 86/136 (63%)
 Frame = +3

Query: 285 ATVVLLGTVHFSKQSIEDVSEIVKILNPNGILVELCRQRVSXXXXXXXXXXXXAKNFDSK 464
           +T+ L+GT HFSK+S EDVS  ++ + P+ +++ELC  R+S            AK+ +S+
Sbjct: 154 STIYLIGTAHFSKESQEDVSNTIRAVQPDFVMLELCPSRISIISMDEARLLSEAKDLNSQ 213

Query: 465 KLKQAVKGQNLVTGMLHAMLLKTYADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRP 644
           K+ Q +K    + G+LH +LL   A + +EL +APGGEFR A+        C++ LGDRP
Sbjct: 214 KIIQTMKQNGAIQGILHVLLLSMSAHVTRELSMAPGGEFRAAHRAAVATENCRVVLGDRP 273

Query: 645 IQITIARAFQSLSVYE 692
           IQ+T+ RA  SLS+++
Sbjct: 274 IQVTLQRALASLSIWQ 289


>AF068717-4|AAC17764.2|  357|Caenorhabditis elegans Serpentine
           receptor, class w protein144 protein.
          Length = 357

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +1

Query: 160 ALSQQNQILYKHIIVKRFYYERKVMYPSIYQNLLHFCKMINKP 288
           +L Q   +L++ I  + FYYE  +   SI+ N+ HF  +I+KP
Sbjct: 21  SLCQFESLLFE-ISNRVFYYEHYLSVASIFINIFHFLILIHKP 62


>Z19158-5|CAJ76965.1|  237|Caenorhabditis elegans Hypothetical
           protein T23G5.2b protein.
          Length = 237

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 8   IYKSVFDTT*NKFSSILQICDEIPVFINSEIKYE 109
           IYK  F+     +      C +IP+F+ SE+ YE
Sbjct: 11  IYKHPFEIVMAAYEMRFPTCPQIPIFVGSEVTYE 44


>Z19158-4|CAJ76964.1|  719|Caenorhabditis elegans Hypothetical
           protein T23G5.2a protein.
          Length = 719

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 8   IYKSVFDTT*NKFSSILQICDEIPVFINSEIKYE 109
           IYK  F+     +      C +IP+F+ SE+ YE
Sbjct: 11  IYKHPFEIVMAAYEMRFPTCPQIPIFVGSEVTYE 44


>U23529-1|AAK39160.1|  269|Caenorhabditis elegans Hypothetical
           protein C15B12.2 protein.
          Length = 269

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -1

Query: 254 FW*MLGYITFLS**NLLTIICLYSIWFCCDNAFNILK*QLSSYYTYWAFHILFHY 90
           FW +L +IT+L    LL I CLY  + C  N+F        S+  Y  F + FHY
Sbjct: 62  FWYILTFITYLVWTLLLWIPCLYH-YTCRHNSFYHRHKLCRSFIRY--FSVTFHY 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,876,974
Number of Sequences: 27780
Number of extensions: 361194
Number of successful extensions: 920
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)