Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8b17
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    23   1.6  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.0  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.0  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   6.7  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    21   8.8  

>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 427 LCL*NITVRKNTIFLFYCMKWIVIVYTLGKEKHNTYQ-TSFVIEHL 561
           LC   +   + ++ L Y M+W     T+ +EK   Y+ ++FV +HL
Sbjct: 273 LCDCVVKEAQKSLVLTYEMRWYCQTATM-EEKQELYEFSNFVSQHL 317


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 493 VIVYTLGKEKHN-TYQTSFVIEHLVPCLLQCP 585
           V++Y    E  + T+QT+ V++H   CL   P
Sbjct: 90  VLMYNSADEGFDGTFQTNVVVKHNGSCLYVPP 121


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 493 VIVYTLGKEKHN-TYQTSFVIEHLVPCLLQCP 585
           V++Y    E  + T+QT+ V++H   CL   P
Sbjct: 90  VLMYNSADEGFDGTFQTNVVVKHNGSCLYVPP 121


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 208 SEPDACTDCSSAKSRAPTPPPT 143
           S+ D   + +S  S   TPPPT
Sbjct: 416 SQSDITNNVNSPASMNQTPPPT 437


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = -2

Query: 523 VFLCLMYIQLQSI 485
           +FL L+++Q+QS+
Sbjct: 198 IFLVLVFVQMQSV 210


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,259
Number of Sequences: 336
Number of extensions: 3167
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)