Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8b17
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi...    27   2.3  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    26   4.1  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    26   4.1  
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...    26   5.4  
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch...    25   7.2  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   9.5  
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    25   9.5  

>SPBC1539.01c |||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +1

Query: 34  TSFEKIWSSLASGLSAV 84
           +SFEKI+SS+ SGL AV
Sbjct: 159 SSFEKIYSSIVSGLVAV 175


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 160 PTPPPTTPKVDSHTFLFFCPSLSVGGQLTSLRPN*TI 50
           P+   T P+V SH FL  C SLS     T   P+ +I
Sbjct: 243 PSTRITIPEVFSHPFLMGCTSLSSMDSTTPPTPSLSI 279


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 354 YNFIYDFCCIIEIEFK 307
           Y+F+ DFCC I IE +
Sbjct: 404 YDFLMDFCCSILIELR 419


>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 8/13 (61%), Positives = 13/13 (100%)
 Frame = +2

Query: 578 SVRRGYEVYKQVC 616
           S+RRG++VY++VC
Sbjct: 90  SLRRGFQVYREVC 102


>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
           Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 3   WRPPSVGFVGHVF*KNM 53
           W+ PS+GFV  +F  N+
Sbjct: 61  WKSPSIGFVNRIFHPNI 77


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 526 YVFLCLMYIQLQSISYSKTR 467
           +VFLCLMY+Q    S+SK R
Sbjct: 504 FVFLCLMYLQ---TSHSKLR 520


>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -2

Query: 205 EPDACTDCSS--AKSRAPTPPPTTP 137
           EPD  T  ++  AK   PTP P+TP
Sbjct: 27  EPDETTSTATGIAKVSIPTPKPSTP 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,640,203
Number of Sequences: 5004
Number of extensions: 50949
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)