Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8b17
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0327 - 7284829-7284889,7284946-7286126 35 0.065
02_04_0203 - 20888010-20888162,20888242-20888469,20888969-208890... 31 0.60
02_01_0206 + 1388149-1388330,1388527-1388629,1388896-1388964,138... 31 0.60
10_08_0870 - 21178136-21178534 30 1.4
04_04_0716 + 27513201-27513854 30 1.8
02_05_1158 - 34550049-34551241,34551354-34551521,34551847-345522... 29 3.2
05_07_0055 - 27374028-27374080,27374205-27374295,27374930-273754... 28 7.4
05_05_0070 + 22148595-22148907,22148988-22149104,22149196-221493... 28 7.4
09_04_0501 + 18153252-18153453,18153973-18154224,18154809-181550... 27 9.8
09_02_0121 + 4502628-4502696,4503727-4503829,4504205-4504328,450... 27 9.8
01_05_0635 - 23847255-23847287,23847397-23848083,23848178-238485... 27 9.8
>09_02_0327 - 7284829-7284889,7284946-7286126
Length = 413
Score = 34.7 bits (76), Expect = 0.065
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -2
Query: 181 SSAKSRAPTPPPTTPKVDSHTFLFFCPSLSVGGQLTSLRPN*TIFFQKTCPTNP 20
+S SR P PPP P + H FLF L++G + P F PT+P
Sbjct: 138 ASGDSRNPPPPPRRPAIVLHAFLFLLAYLAMGVTFYAALPG--NFTSSAGPTHP 189
>02_04_0203 -
20888010-20888162,20888242-20888469,20888969-20889073,
20889148-20889225,20889308-20889382,20890037-20890123,
20890216-20890283,20890396-20890483,20890583-20890683,
20890793-20890913,20891008-20891169,20891271-20891441
Length = 478
Score = 31.5 bits (68), Expect = 0.60
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -2
Query: 181 SSAKSRAPTPPPTTPKVDSHTFLFF-CPSLSVGGQLTSLRPN*TIFFQKTCPTNPTDGG 8
+++ S AP+PPP P+V + F C S S GG RP + F QK T G
Sbjct: 12 AASPSPAPSPPPPRPRVSAAAAASFPCCSTSAGGLRLRSRP--SRFPQKAATTRSGRAG 68
>02_01_0206 +
1388149-1388330,1388527-1388629,1388896-1388964,
1389684-1389803,1390352-1390482,1390840-1390881,
1390961-1391138,1391241-1391319,1391441-1391610,
1392503-1392629,1392731-1392846,1392926-1393033,
1393118-1393180,1393283-1393456,1393814-1393978
Length = 608
Score = 31.5 bits (68), Expect = 0.60
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -2
Query: 184 CSS-AKSRAPTPPPTTPKVD-SHTFLFFCPSLSVGGQLTSLRPN*TIF 47
CS+ A S P+PPPT P V S + PSL+VG L PN I+
Sbjct: 31 CSATASSATPSPPPTGPPVTASPSSASTRPSLAVGEALHYTPPNHIIY 78
>10_08_0870 - 21178136-21178534
Length = 132
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 196 ACTDCSSAKSRAPTPPPTTP 137
AC DC S K AP P P TP
Sbjct: 21 ACPDCPSPKPPAPRPKPPTP 40
>04_04_0716 + 27513201-27513854
Length = 217
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 211 ASEPDACTDCSSAKSRAPTPPPTTPKVDSHTFLFFCPSL 95
A PD C+ S+A +P PPP + D + LF P L
Sbjct: 142 AKSPDTCSVASAA---SPQPPPPDAEADPDSTLFDLPDL 177
>02_05_1158 -
34550049-34551241,34551354-34551521,34551847-34552231,
34552245-34552772
Length = 757
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +1
Query: 55 SSLASGLSAVHQHSRMDKKTEKCGCPLWEW*VEVLELYFLHLSSLCRHQALKLTHLTTL 231
S ++ G S ++ S + GCP+ + V+ E Y S+CR HL T+
Sbjct: 121 SDVSFGRSTAYRFSAARNRFVVLGCPVLGYLVDAEEYYVSGCISMCRKSQAGNDHLNTI 179
>05_07_0055 -
27374028-27374080,27374205-27374295,27374930-27375448,
27375544-27375779,27376363-27376846,27376993-27378282
Length = 890
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 184 CSSAKSRAPTPPPTTPKVDSHTFLFFCPSLSV 89
C+ K+R PTPPP P+ L F LSV
Sbjct: 59 CARPKTRHPTPPPPPPR---RCHLLFTMKLSV 87
>05_05_0070 +
22148595-22148907,22148988-22149104,22149196-22149350,
22149987-22150061,22150179-22150469,22150942-22151292,
22151390-22151794
Length = 568
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -2
Query: 175 AKSRAPTPPPTTPKVDS 125
AK + P PPP++P+VD+
Sbjct: 78 AKEKKPPPPPSSPRVDA 94
>09_04_0501 +
18153252-18153453,18153973-18154224,18154809-18155015,
18155198-18157046,18157334-18157381,18158222-18158291,
18158380-18158475,18158583-18158621,18158714-18158924,
18159037-18159178,18159275-18159407,18159762-18159878
Length = 1121
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 140 SGRWRCWSSTFCT*AVCAGIRL*SSPTSQPLESQWLVQLPGP 265
SGR RC S + + A R+ +SP +PL L +P P
Sbjct: 271 SGRLRCTSPSLALALLRAACRVRASPCLRPLAHHLLDHIPRP 312
>09_02_0121 +
4502628-4502696,4503727-4503829,4504205-4504328,
4505963-4506306,4506383-4506487,4507907-4508288,
4509173-4509437,4509936-4510094,4511150-4511201,
4511266-4511462,4512865-4513350,4513797-4514093
Length = 860
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 204 SLMPAQTAQVQKVELQHLHLP 142
S+MP QT Q+ LQ L+LP
Sbjct: 506 SVMPTQTGHAQEARLQQLNLP 526
>01_05_0635 -
23847255-23847287,23847397-23848083,23848178-23848540,
23848633-23848725,23848820-23848870,23849031-23849304,
23849766-23850595
Length = 776
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 172 KSRAPTPPPTTPKVDSHTFLF 110
+ RAP PPP P SH +F
Sbjct: 119 EERAPPPPPAPPPKSSHVVVF 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,138,398
Number of Sequences: 37544
Number of extensions: 332519
Number of successful extensions: 1388
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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