Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8b17
(650 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 24 1.5
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.9
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.5
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.5
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 22 5.9
AB201717-1|BAD90662.1| 107|Apis mellifera apime-corazonin prepr... 22 5.9
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 23.8 bits (49), Expect = 1.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 596 HNPDGHCNKHGTRCSMTNDV**VLCFSL 513
HN + HC H T+ T+D +CF++
Sbjct: 1681 HNVNKHCTIHRTQVKETDD---KICFTM 1705
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.9
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 493 VIVYTLGKEKHN-TYQTSFVIEHLVPCLLQCP 585
+++Y E + TYQTS V+ H CL P
Sbjct: 73 ILMYNSADEGFDGTYQTSVVVTHNGSCLYVPP 104
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.6
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 493 VIVYTLGKEKHN-TYQTSFVIEHLVPCLLQCP 585
+++Y E + TYQTS V+ H CL P
Sbjct: 73 ILMYNSADEGFDGTYQTSVVVTHDGSCLYVPP 104
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.6
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 493 VIVYTLGKEKHN-TYQTSFVIEHLVPCLLQCP 585
+++Y E + TYQTS V+ H CL P
Sbjct: 73 ILMYNSADEGFDGTYQTSVVVTHDGSCLYVPP 104
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.6
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 493 VIVYTLGKEKHN-TYQTSFVIEHLVPCLLQCP 585
+++Y E + TYQTS V+ H CL P
Sbjct: 73 ILMYNSADEGFDGTYQTSVVVTHDGSCLYVPP 104
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.6
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 493 VIVYTLGKEKHN-TYQTSFVIEHLVPCLLQCP 585
+++Y E + TYQTS V+ H CL P
Sbjct: 73 ILMYNSADEGFDGTYQTSVVVTHDGSCLYVPP 104
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.6
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 493 VIVYTLGKEKHN-TYQTSFVIEHLVPCLLQCP 585
+++Y E + TYQTS V+ H CL P
Sbjct: 73 ILMYNSADEGFDGTYQTSVVVTHDGSCLYVPP 104
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 4.5
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 493 VIVYTLGKEKHN-TYQTSFVIEHLVPCLLQCP 585
+++Y E + TYQT+ V+ H CL P
Sbjct: 141 ILMYNSADEGFDGTYQTNVVVTHNGSCLYVPP 172
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 4.5
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 493 VIVYTLGKEKHN-TYQTSFVIEHLVPCLLQCP 585
+++Y E + TYQT+ V+ H CL P
Sbjct: 141 ILMYNSADEGFDGTYQTNVVVTHNGSCLYVPP 172
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.8 bits (44), Expect = 5.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 183 QSVQASGSEAHPPHNPWNHSGWFSSLDHAR 272
+++ SGS PP P NH SS + ++
Sbjct: 1849 RNIPVSGSPEPPPPPPRNHDQNNSSFNDSK 1878
>AB201717-1|BAD90662.1| 107|Apis mellifera apime-corazonin
preprohormone protein.
Length = 107
Score = 21.8 bits (44), Expect = 5.9
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +2
Query: 74 CQLSTNTQGWTKKQKSVAV 130
CQ T + GWT ++S ++
Sbjct: 21 CQTFTYSHGWTNGKRSTSL 39
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,698
Number of Sequences: 438
Number of extensions: 3666
Number of successful extensions: 19
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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