Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8b16
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch...    29   0.33 
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    27   2.3  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    27   2.3  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   4.0  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    25   5.3  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   5.3  
SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyce...    25   5.3  
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    25   5.3  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   7.0  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    25   7.0  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.0  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.0  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.3  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    25   9.3  
SPAC630.11 |vps55||vacuolar sorting protein Vps55 |Schizosacchar...    25   9.3  

>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 30/94 (31%), Positives = 42/94 (44%)
 Frame = +3

Query: 180 NQTKLDTLEKKAVHLRLVLEKDFKAADLKWSLFVAAAFSFRYESCLRPFPPAFMKSGIKD 359
           N  K +TL      LRL  EK+    D  W LF     S   E C R FP   + +GI  
Sbjct: 182 NTEKPETLISGTTLLRLNPEKNIIYIDGDWDLFTEKHIS-ALELCTRMFPGIPIMAGIFA 240

Query: 360 MDELLSVITDVPALDLVLQQLDNLEALPNISDII 461
            ++      + P L+L L+++ NL     IS I+
Sbjct: 241 DEKCF----EKPMLNL-LERILNLLQCKYISSIL 269


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -1

Query: 163 SDTEAILQLVPVSDNTSCSL 104
           S+T AI+Q+VP S+NT  S+
Sbjct: 277 SETNAIIQVVPFSENTLLSV 296


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
 Frame = +3

Query: 279 VAAAFSFRYESCLRPFPPAF---MKSGIKDMDELLSVITDVPALDLVLQQLDNLEALPNI 449
           V   F    +  LR   P+F   M    KD+D  LSV TD     +V   L+   ++  I
Sbjct: 462 VGRTFEESLQKALRQVDPSFLGFMAMPFKDLDNALSVPTDRRFFAVVEAMLNQGYSIDKI 521

Query: 450 SDIIDLLFYVLVRL 491
            D+  +  + L +L
Sbjct: 522 HDLTKIDKWFLSKL 535


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 162 ETMSDINQTKLDTLEKKAVHLRLVLEK 242
           E   DI++TKLDTL  +     L+LEK
Sbjct: 535 EFTDDIHRTKLDTLLTQVRPKELILEK 561


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 171 TLSLIPRLYYNWYPFLITPRALSPFYE*TNIAF 73
           T +++ +  YN+YPF++ P A   F + T+  F
Sbjct: 807 TKAMVEKGVYNYYPFIV-PNANHEFSDPTDYTF 838


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -1

Query: 259  SAALKSFSKTSLR*TAFFSKVSNLV*LISDIVSDTEAILQL-VPVSDN 119
            S ALK  + T+L   A   K+S  V  + +  S T+AI  L +P++D+
Sbjct: 1720 SVALKELNATNLLQKAALHKISRFVNALCNEESLTDAICNLPLPLADS 1767


>SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 97

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 123 SETGTNCNIASVSETMSDINQTKLDTLEKKAVHLRLVLEKD 245
           +E   NC +  +S T  D   + LD +  +  H+R ++  D
Sbjct: 33  AEDNMNCQMRDISVTARDGRVSHLDQVYIRGSHIRFLIVPD 73


>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 354 KDMDELLSVITDVPALDLVLQQLDNLEALPN 446
           K  +ELL  I   PA+   LQQ D  E   N
Sbjct: 295 KKNEELLRTIDKAPAISKKLQQKDKAEKFSN 325


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 96  KMEREHEVLSETGTNCNIASVSETMSDINQTKLDTLEKK 212
           K+ER H+VL   G N ++  +  T  +    +++  +KK
Sbjct: 43  KIERLHQVLGTDGDNSSLFELFTTAMNAQLHEMEQCQKK 81


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 144 NIASVSETMSDINQTKLDTLEKKAVHLRLVLEKDFKAADLKWSLF 278
           N AS   T  D  +TK+D+ EKK  H  +     FK  D+   +F
Sbjct: 107 NSASTLVTNDDGTKTKVDSDEKKHKHKNVRDYIRFKHVDIGGRIF 151


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 234 LEKDFKAADLKWSLF-VAAAFSFRYESCLRPFPP 332
           LE DF    +  + F V   F++   SCL+P PP
Sbjct: 315 LESDFLLRQIHAAFFFVTICFTWISISCLKPSPP 348


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 436 ASKLSNCCSTKSKAGTSVITLSNSSMS 356
           +S   +  ST S +GTSVIT S+ S S
Sbjct: 74  SSSSPSSTSTSSSSGTSVITASDVSAS 100


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 32/144 (22%), Positives = 57/144 (39%)
 Frame = -1

Query: 532 SCTSVGTVFNVGSLSRTRT*NNKSMISLIFGNASKLSNCCSTKSKAGTSVITLSNSSMSL 353
           S TSV    +  SLS +    + +  SL    +S   +  ST S   +S    S SS  L
Sbjct: 151 SSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYL 210

Query: 352 MPLFIKAGGKGRRQLS*RKLKAAATNKLHFKSAALKSFSKTSLR*TAFFSKVSNLV*LIS 173
               + +        S   L +++ +     S +  S S +S   ++  S  ++     S
Sbjct: 211 SSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSS 270

Query: 172 DIVSDTEAILQLVPVSDNTSCSLS 101
            I+S + +     P S +++ S S
Sbjct: 271 SIISSSSS-SSSSPTSTSSTISSS 293


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +3

Query: 156 VSETMSDINQTKLDTLEKKAVHLRLVLEKDFKAADLKWSLFVAAAFSFRYESCLRPFPPA 335
           +SE++ D +  K   +EK    +  +  KDF   D  +S F+  A  F  +   +P  P 
Sbjct: 1   MSESIQDQDHEKTTIIEKTRRFVLSIFTKDFWIGDYDYS-FLLPAIPFTKQ---KPKSPP 56

Query: 336 FMKSGIK 356
           F     K
Sbjct: 57  FFSLNAK 63


>SPAC630.11 |vps55||vacuolar sorting protein Vps55
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 150 LYYNWYPFLITP 115
           L+ NWYP LI P
Sbjct: 27  LFKNWYPLLIAP 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,723
Number of Sequences: 5004
Number of extensions: 45169
Number of successful extensions: 120
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)