Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8b14
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    29   0.41 
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    26   3.8  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   5.1  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    25   6.7  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    25   8.9  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   8.9  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   8.9  

>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 29.1 bits (62), Expect = 0.41
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
 Frame = -2

Query: 513 IVENRVQVKSDHTDENG------KREYVGHII*YLVHNFVSLHGIFGIVSEMVKMN-FVN 355
           +VE  + +KS+  +E G        E + +I  Y+ HN V L  +  + S+ ++M  F+ 
Sbjct: 28  VVEKFLPLKSEVEEEQGFSTPCLTHEGINYI--YIHHNDVYLLALSKMNSDAMEMLVFLR 85

Query: 354 ELLSDDIVFFKASQYQSALDNFI 286
           ++    I +FK  Q +S  DNF+
Sbjct: 86  KMADVFIDYFKELQEESIRDNFV 108


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +1

Query: 400 SMKTYKVVHKISNNMTYIFSFSIFVCVVTFNL 495
           + K Y+V+  + + +T++F+F +F   ++ NL
Sbjct: 302 TFKKYQVIEALKDPVTWLFTFHVFCNQLSNNL 333


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 168 YIYYSSKIDAKVFSYTKTVSVNSIIAKWYSYFKIIN-IYP 284
           ++ Y+++ D  ++SY  T   ++II  W S   + N IYP
Sbjct: 642 WVLYANRNDTHLWSYDCTDEDSAIIGPWKSGTTLRNLIYP 681


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 364 IHLYHFRNDSEYSMKTYKVVHKISNNMTYIFSFSIFVCV 480
           I++Y +  DS++    Y+   +  +NMT    FS F C+
Sbjct: 224 INIYEWCGDSDFVSSGYQERTEEFSNMTVPMIFSEFGCI 262


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 174 IYNVFIYLYQNTVSLCKTIAI 112
           I+++ +YLY N VSL +T A+
Sbjct: 557 IHSLCVYLYNNGVSLLRTRAM 577


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 144 FDIN-K*IHYIYYSSKIDAKVFSYTKTVSVNSIIAKW 251
           FD++ K I  I YS  +  ++FSY + V +N  + +W
Sbjct: 13  FDVSHKIIEDIVYS--LSNRIFSYAEHVPLNRYLTQW 47


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = -2

Query: 477 TDENGKREYVGHII*YLVHNFVSLHGIFGIVSEMVKMNFVNELLSDDIVFFKA 319
           T + G RE    ++  LV+  +   G   +VS++++    +   +DD++ FKA
Sbjct: 772 TSKRG-REVTKELVNSLVNRHLQSGGNIDMVSQLLRKKCGSFCSADDVLIFKA 823


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,944,362
Number of Sequences: 5004
Number of extensions: 36545
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)