Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8b14
         (517 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19228| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_29091| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_25074| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_23445| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_6239| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  

>SB_19228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 400 SMKTYKVVHKISNNMTYIFSFSIFVCVVT 486
           S++T  V HK S    Y  S  IF CV+T
Sbjct: 43  SLRTKHVTHKTSEPQNYTNSIQIFPCVIT 71


>SB_29091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 396 FGIVSEMVKMNFVNELLSDDIVFFKASQYQSALDNFIQDRY 274
           F  V +++ +   N L+SDD + F   +YQS    F  D Y
Sbjct: 4   FKEVRDLLLLEHSNGLISDDELLFFMGEYQSKNPEFTYDIY 44


>SB_25074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 911

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 360 QNSSLPFQKRFRIFHEDLQSCAQDIK*YDLHILFFHFRLCGH 485
           Q   L   ++F++ H +L+    D+K  D  I    FRLC H
Sbjct: 798 QKKKLRTLRKFKLSH-NLEDYLTDVKNIDHRIALTKFRLCNH 838


>SB_23445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 90

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 396 FGIVSEMVKMNFVNELLSDDIVFFKASQYQSALDNFIQDRY 274
           F  V +++ +   N L+SDD + F   +YQS    F  D Y
Sbjct: 4   FKEVRDLLLLEHSNGLISDDELLFFMGEYQSKNPEFTYDIY 44


>SB_6239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 396 FGIVSEMVKMNFVNELLSDDIVFFKASQYQSALDNFIQDRY 274
           F  V +++ +   N L+SDD + F   +YQS    F  D Y
Sbjct: 4   FKEVRDLLLLEHSNGLISDDELLFFMGEYQSKNPEFTYDIY 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,272,054
Number of Sequences: 59808
Number of extensions: 230035
Number of successful extensions: 331
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)