Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8b14
         (517 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.3  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   5.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   7.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   7.5  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   10.0 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   10.0 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   10.0 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   10.0 

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 144 FDINK*IHYIYYSSKIDAKVFSYTKTVSVNSIIAKWYSYFKIIN 275
           FD NK I+  +YS+ + +   ++ +    +S+    Y Y  +IN
Sbjct: 287 FDWNKPINSGFYSTIMYSNGVTFPQRNRFSSLPYYKYKYLNVIN 330


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 144 FDINK*IHYIYYSSKIDAKVFSYTKTVSVNSIIAKWYSYFKIIN 275
           FD NK I+  +YS+ + +   ++ +    +S+    Y Y  +IN
Sbjct: 287 FDWNKPINSGFYSTIMYSNGVTFPQRNRFSSLPYYKYKYLNVIN 330


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +1

Query: 385 NDSEYSMKTYKVVHKISNNM 444
           ND +YS + Y  VH   + +
Sbjct: 371 NDQDYSSQNYLTVHSFPSTL 390


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 174 IYNVFIYLYQNTVSLCKTIAIEL 106
           + N FI+LY N++   +   IEL
Sbjct: 18  LINYFIFLYFNSLVRFRRFTIEL 40


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -2

Query: 159 IYLYQNTVS 133
           +YLYQNT+S
Sbjct: 377 VYLYQNTMS 385


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -2

Query: 159 IYLYQNTVS 133
           +YLYQNT+S
Sbjct: 415 VYLYQNTMS 423


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 353 SLTKFIFTISETIPNI 400
           SLT F+  ++ET+P +
Sbjct: 235 SLTVFLNLVAETLPQV 250


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 353 SLTKFIFTISETIPNI 400
           SLT F+  ++ET+P +
Sbjct: 235 SLTVFLNLVAETLPQV 250


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 353 SLTKFIFTISETIPNI 400
           SLT F+  ++ET+P +
Sbjct: 235 SLTVFLNLVAETLPQV 250


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 353 SLTKFIFTISETIPNI 400
           SLT F+  ++ET+P +
Sbjct: 303 SLTVFLNLVAETLPQV 318


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,217
Number of Sequences: 438
Number of extensions: 2669
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)