Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8b13
         (537 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   1.7  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    22   3.9  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    22   3.9  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           22   3.9  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +1

Query: 7   MSYYALFVIFL*KYFYFYMEYTLKDIY 87
           + Y+ L ++FL   +YFY  + +  I+
Sbjct: 199 LDYFTLHLLFLPCIYYFYSAFIIFTIH 225



 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 13  YYALFVIFL*KYFYFY 60
           YYA F+I L  Y+++Y
Sbjct: 104 YYA-FIILLCVYYFYY 118


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 213 KHFFVKTFFVRRQRSVLAADSLRYFFINMIIWF 115
           K F    +  RR+R +  A+SLR     + IWF
Sbjct: 200 KEFHFNKYLTRRRR-IEIAESLRLTERQIKIWF 231


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 213 KHFFVKTFFVRRQRSVLAADSLRYFFINMIIWF 115
           K F    +  RR+R +  A+SLR     + IWF
Sbjct: 200 KEFHFNKYLTRRRR-IEIAESLRLTERQIKIWF 231


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 213 KHFFVKTFFVRRQRSVLAADSLRYFFINMIIWF 115
           K F    +  RR+R +  A+SLR     + IWF
Sbjct: 200 KEFHFNKYLTRRRR-IEIAESLRLTERQIKIWF 231


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,276
Number of Sequences: 336
Number of extensions: 2611
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13097125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)