Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8b12
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    27   1.7  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    27   2.9  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    27   2.9  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    25   6.7  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    25   6.7  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.8  
SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.8  

>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 335 HFGGGTTFVFFRNACIVKAGTILGFLVL 252
           H GGG     F N  IVK  ++ G LVL
Sbjct: 410 HVGGGLKIHVFDNEIIVKVNSVTGRLVL 437


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -1

Query: 522 ISALG*AVKEHRQVVMEVQFLYGNLPSQXFSGNSELDADGKFASXITFXEHRRS 361
           IS++  A++EH +V+ + +F    LPS  F     L A  + +  I F E   S
Sbjct: 493 ISSVALALQEHCKVIFDEEFDLSKLPSSNFLDEIIL-ASNRISVRIKFLERNCS 545


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +1

Query: 472 FHHYLPMFFDGLAEGTYPYSFIVERGIHDLVTK 570
           F   L + FD  ++GT+P SF++++    ++T+
Sbjct: 575 FAQSLGIVFDDYSDGTFPDSFVIQKFTKFMLTE 607


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 20/73 (27%), Positives = 27/73 (36%)
 Frame = +2

Query: 155 LKWXCCRPVCHXAAERISGIL*RNRALXILMAIRRGSQESFRLLRYKHYERTQK*CHLQN 334
           LKW C        AER   +L  +    + M  R  S  S   L Y H     K  + Q 
Sbjct: 369 LKWECDYEREAAFAERFGSLLKNDSDFKVPMVFREASGPSVITLEYLHGIALGKQKYSQA 428

Query: 335 VASSIPCLRDRRC 373
             + I  L  ++C
Sbjct: 429 TRNHIGYLLTKQC 441


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 304 KNTKVVPPPKCGVFDPLPPRPTMFXKCY 387
           K TK+ P P C +   L P  T F K Y
Sbjct: 104 KPTKIYPLPHCFIVKDLVPDLTYFYKQY 131


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 23  IGGRPLNKFTFLFYYLC 73
           I G  LN+FT   YYLC
Sbjct: 578 ICGWRLNRFTMFIYYLC 594


>SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 149

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 287 RYKHYERTQK*CHLQNVAS 343
           RY ++E  +K CH+Q + S
Sbjct: 19  RYSYFEAFEKNCHIQGILS 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,066
Number of Sequences: 5004
Number of extensions: 44129
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)