Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8b12
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0361 + 2838979-2841745,2841897-2842285                           29   3.9  
12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045           28   5.2  
03_05_0524 - 25181432-25181483,25181565-25181691,25181776-251818...    27   9.1  

>01_01_0361 + 2838979-2841745,2841897-2842285
          Length = 1051

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +3

Query: 240  SLWL*DEEAKNRSGFYDTSITKEHKSSATSKMWRLRSPASETDDVXKMLSXRRISRLHRV 419
            ++WL  EEAKN+    D SIT+         + RL    S+     +ML    +S++H +
Sbjct: 982  TIWL-HEEAKNKD-ITDASITRSIVQDCLVSVLRLGISCSKQQAKDRMLLADAVSKMHAI 1039


>12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045
          Length = 1294

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 303 KEHKSSATSKMWRLRSPASETDDVXKMLSXRRISRLHRVH 422
           KE  S+  + +W+LR    E +DV  +L   ++  + + H
Sbjct: 74  KEQSSALDAWLWQLRHAVEEAEDVIDVLEYYKLKEMAKDH 113


>03_05_0524 -
           25181432-25181483,25181565-25181691,25181776-25181826,
           25182159-25182314,25182405-25182905,25182999-25183713,
           25183797-25183867,25183974-25184103,25185706-25186167
          Length = 754

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 265 PRIVPAFTIQALRKNTKVVPPPKCGVFDPLPPRPTMF 375
           P  +P  T++ +     V PPP   +  PLPP   +F
Sbjct: 359 PPPLPPATVEPVISAPMVEPPPPPAMITPLPPSTPVF 395


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,571,467
Number of Sequences: 37544
Number of extensions: 309021
Number of successful extensions: 774
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)