Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8b09
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    72   7e-14
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     68   2e-12
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    28   1.5  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   2.6  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    27   2.6  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    27   3.5  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    27   3.5  
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    26   4.6  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    26   4.6  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    25   8.0  

>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 72.1 bits (169), Expect = 7e-14
 Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 8/145 (5%)
 Frame = +2

Query: 113 LTIEPQNEXKFKGLFEHGCTTYMRLTNPTNDTVLFKIXTTAPKKYCVRPNSGVLAPNSKQ 292
           +++E   E  F   F       + + NP  + V+FK+ TTAPK YCVRPNSG + P S  
Sbjct: 1   MSVECSGELFFYPPFTTMSKELISVHNPNPEPVIFKVKTTAPKHYCVRPNSGKIEPKSTV 60

Query: 293 EIAITPQPVYLDPNENHK--HKFMVQSVIAPEGKT----NIDQVWKEISPE--QLMDYKL 448
            + +  Q +  +P  + K   KF++QS+   +  T    N  + W E+  +   + D K+
Sbjct: 61  NVQVLLQAMKEEPAPDFKCRDKFLIQSMAIGDADTSNVENYHEFWTEMEKQGRSIFDRKI 120

Query: 449 KCVFETPRGTNLNDSGDNAAQNDVT 523
           +CV+ T +      S D   +N  T
Sbjct: 121 RCVYSTKQPP---QSADKQVENTST 142


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 38/106 (35%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
 Frame = +2

Query: 179 MRLTNPTNDTVLFKIXTTAPKKYCVRPNSGVLAPNSKQEIAITPQPVYLDPNENHK--HK 352
           + L N     + FK+ TTAPK+YCVRPN G +  NS   + +  QP+  +P    K   K
Sbjct: 23  LELRNTAPYPIGFKVKTTAPKQYCVRPNGGRIEANSAVSVEVILQPLDHEPAPGTKCRDK 82

Query: 353 FMVQSV-IAPEGK-TNIDQVWKEISPEQLMDYKLKCVF-ETPRGTN 481
           F+VQS  + PE +  +I  +W ++S   + + K++CV+ E P   N
Sbjct: 83  FLVQSTELKPELQGMDIADIWTQVSKANISERKIRCVYSEGPSTAN 128


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 311 QPVYLDPNENHKHKFMVQSVIAPEGKTNIDQVWKEISP 424
           Q +Y + +EN +  FM+ +++      +ID +W  +SP
Sbjct: 305 QYMYKEDDENLESYFMMVALLIKYNFISIDNIWAHLSP 342


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 317 VYLDPNENHKHKFMVQSVIAPEGKTNIDQVWKEISPE-QLMDY 442
           V+   NE    +  +  +   EG TN+++VW +I+ + Q  D+
Sbjct: 83  VFAKKNEGDLLQNAIYELSQAEGSTNVNEVWNDITEDMQSQDF 125


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 323 NIQVAE*LRFL-VSNLAQELQNWDARNISLVLLFXS 219
           N+Q  E  ++L VSNL  +++ WD R   +V +F S
Sbjct: 228 NLQFTENRKYLLVSNLNSQIRLWDYRRNRVVRIFDS 263


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 338  NHKHKFM-VQSVIAPEGKTNIDQVWKEISPEQLMDYKLKCVFETPRGT 478
            NH   F  V+  I P G TN+D +W+     +L+D  L  +F T   T
Sbjct: 1160 NHPFIFEDVERAIDPSG-TNVDLLWRAAGKFELLDRILPKLFLTGHKT 1206


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/51 (19%), Positives = 28/51 (54%)
 Frame = +3

Query: 201 TIQCYSRSKQQHQRNIACVPILEFLRQIRNKKSQLLRNLYIWTPMKTTSIN 353
           +++ Y+ S +    ++  +P++ F+R +RN +  LL   + +   +++  N
Sbjct: 757 SLRLYNVSAEYLSESLEILPVVSFIRNLRNDEKYLLNADFSYALKRSSGSN 807


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 323 LDPNENHKHKFMVQSVIAPEGKTNIDQV 406
           L  N+NH  +  V +V+  +G TN+D +
Sbjct: 168 LSQNKNHFAQLAVDAVLRLKGSTNLDNI 195


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 304 NCDFLFRIWRKNSRIGTHAIFLWCC 230
           N + +FR+WR   RI  HAI    C
Sbjct: 233 NEEVIFRLWRNIDRIRLHAIRAQLC 257


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 296 FLVSNLAQELQNWDARNISLVLLFXS*IAL 207
           F VSN+  E+ N+D+R+ SL L     +AL
Sbjct: 415 FEVSNIEDEVTNFDSRSFSLRLRRSEIVAL 444


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,141
Number of Sequences: 5004
Number of extensions: 58349
Number of successful extensions: 174
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)