Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8b09
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0103 - 25847224-25847331,25847785-25847862,25848487-258485... 80 2e-15
08_01_0361 + 3165516-3165564,3166316-3166386,3166481-3166562,316... 77 1e-14
04_04_0742 + 27706150-27706198,27706306-27706376,27706490-277065... 70 2e-12
02_05_0213 + 26815889-26816475,26817718-26817788,26817985-268180... 54 1e-07
10_08_0845 - 20968051-20968188,20968769-20968843,20969399-209694... 50 2e-06
02_05_0154 - 26330109-26330189,26330274-26330411,26330518-263306... 47 1e-05
11_03_0071 - 9589669-9590079,9592113-9592334,9592455-9592608,959... 39 0.003
11_06_0355 + 22638029-22638281,22638365-22638593,22640039-226401... 38 0.008
07_03_0883 + 22280381-22280708,22282008-22282078,22282228-222823... 37 0.018
08_01_0282 + 2299688-2299859,2300314-2300384,2300780-2300861,230... 36 0.041
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568... 30 2.1
03_05_0540 + 25375261-25376931 29 3.6
02_05_1272 + 35373843-35374031,35374343-35374490,35374586-353747... 29 4.8
02_05_0468 + 29287867-29287872,29289114-29289156,29289324-292894... 29 4.8
02_05_0596 + 30239186-30239567,30239642-30239742,30240680-302407... 28 6.3
02_01_0071 - 496936-497158,497231-497352,497918-497966,498141-49... 28 8.3
>02_05_0103 -
25847224-25847331,25847785-25847862,25848487-25848528,
25848641-25848763,25848856-25848971,25849062-25849143,
25849233-25849303,25849632-25849689
Length = 225
Score = 79.8 bits (188), Expect = 2e-15
Identities = 48/135 (35%), Positives = 74/135 (54%), Gaps = 4/135 (2%)
Frame = +2
Query: 107 QVLTIEPQNEXKFKGLFEHGCTTYMRLTNPTNDTVLFKIXTTAPKKYCVRPNSGVLAPNS 286
++L I+P E F + + + LTN T++ V FK+ TT+PKKYCVRPN+G++AP S
Sbjct: 7 ELLGIDPP-ELIFPFELKKQISCSLHLTNKTDEYVTFKVKTTSPKKYCVRPNNGIVAPQS 65
Query: 287 KQEIAITPQPV-YLDPNENHKHKFMVQSVIAPEGKTNID---QVWKEISPEQLMDYKLKC 454
+ +T Q P+ K KF+VQS I + T D ++ + S + + KLK
Sbjct: 66 TSNVLVTMQAQREAPPDMQCKDKFLVQSAIVTQELTPKDITGDMFTKESGNVVDEVKLKV 125
Query: 455 VFETPRGTNLNDSGD 499
V+ P T+LN +
Sbjct: 126 VYTQPHPTSLNGGSE 140
>08_01_0361 +
3165516-3165564,3166316-3166386,3166481-3166562,
3166677-3166792,3166892-3167053,3167158-3167202,
3168097-3168174,3168632-3168742
Length = 237
Score = 77.0 bits (181), Expect = 1e-14
Identities = 46/126 (36%), Positives = 72/126 (57%), Gaps = 5/126 (3%)
Frame = +2
Query: 98 MPNQVLTIEPQN-EXKFKGLFEHGCTTYMRLTNPTNDTVLFKIXTTAPKKYCVRPNSGVL 274
M L I+P F+ L + C+ M+LTN T+ V FK+ TT PK+YCVRPN GV+
Sbjct: 1 MSASFLEIQPSELSFPFELLKQSSCS--MQLTNKTDHYVAFKVKTTNPKQYCVRPNIGVV 58
Query: 275 APNSKQEIAITPQPV-YLDPNENHKHKFMVQSVIAPEGKTNID---QVWKEISPEQLMDY 442
P S ++ +T Q P+ K KF+VQSV A G T D +++ +++ + + ++
Sbjct: 59 LPGSTCDVTVTMQAQREAPPDMQCKDKFLVQSVAAENGATTQDISAEMFNKVAGKVVEEF 118
Query: 443 KLKCVF 460
KL+ V+
Sbjct: 119 KLRVVY 124
>04_04_0742 +
27706150-27706198,27706306-27706376,27706490-27706571,
27706695-27706810,27706899-27707075,27707148-27707195,
27707786-27707863,27708724-27708837
Length = 244
Score = 69.7 bits (163), Expect = 2e-12
Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 4/125 (3%)
Frame = +2
Query: 98 MPNQVLTIEPQNEXKFKGLFEHGCTTYMRLTNPTNDTVLFKIXTTAPKKYCVRPNSGVLA 277
M N +L + P +E K ++ + M+LTN TN V FK+ TT P+KY VR G+L
Sbjct: 1 MSNTLLRVHP-SELKIPYEYKRKRSCCMQLTNKTNQYVAFKVKTTNPRKYSVRHACGILP 59
Query: 278 PNSKQEIAITPQ-PVYLDPNENHKHKFMVQSVIAPEGKTNID---QVWKEISPEQLMDYK 445
P S +I +T Q PV + + + K KF+VQSV G T D +++ + + ++K
Sbjct: 60 PRSSCDITVTMQAPVEMLSDYHCKDKFLVQSVAVGYGATMRDFVPELFTKAPGRVIEEFK 119
Query: 446 LKCVF 460
L+ V+
Sbjct: 120 LRVVY 124
>02_05_0213 +
26815889-26816475,26817718-26817788,26817985-26818073,
26818910-26818991,26819089-26819204,26819290-26819451,
26819531-26819680,26819969-26820037,26820375-26820491
Length = 480
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Frame = +2
Query: 218 KIXTTAPKKYCVRPNSGVLAPNSKQEIAITPQPVYLDPNE-NHKHKFMVQSVIAPEGKTN 394
++ TT P+KY VRP +G++ P I I+ QP P + N K KF++QSV+ +G T
Sbjct: 249 QVKTTNPRKYSVRPTTGIVLPRGSCGITISMQPPKEIPTDYNCKDKFLIQSVVVEDGTTQ 308
Query: 395 ID---QVWKEISPEQLMDYKLKCVF 460
D ++ + + + + ++KL+ V+
Sbjct: 309 KDIHSDMFSKEAGKVVEEFKLRVVY 333
>10_08_0845 -
20968051-20968188,20968769-20968843,20969399-20969425,
20969512-20969649,20969765-20969880,20970000-20970081,
20970105-20970226,20970314-20970368
Length = 250
Score = 49.6 bits (113), Expect = 2e-06
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Frame = +2
Query: 218 KIXTTAPKKYCVRPNSGVLAPNSKQEIAITPQ-PVYLDPNENHKHKFMVQSVIAPEGKTN 394
K+ TT+P+KY VRPN+ ++ P I IT Q P+ K KF++QS T+
Sbjct: 59 KVKTTSPRKYFVRPNASIIQPWDSCTITITLQAQKEYPPDMQCKDKFLIQST-KVAASTD 117
Query: 395 IDQV----WKEISPEQLMDYKLKCVFETPRGTNLNDSG 496
+D++ + + + + + KLK V+ P G++ +DSG
Sbjct: 118 MDEIPPNTFNKEVDKVIEEMKLKVVYTVPSGSS-DDSG 154
>02_05_0154 -
26330109-26330189,26330274-26330411,26330518-26330633,
26330782-26330863,26332706-26332770,26333016-26333112,
26334066-26334136,26334242-26334304,26334379-26334431,
26335143-26335192,26336295-26336340,26337014-26337019,
26337381-26337511,26337594-26337680,26338472-26338849
Length = 487
Score = 47.2 bits (107), Expect = 1e-05
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Frame = +2
Query: 221 IXTTAPKKYCVRPNSGVLAPNSKQEIAITPQPVYLDPNENH-KHKFMVQSVIAPEGKTNI 397
+ TT+P+KY VRPN+ ++ P I IT Q P + K KF++QS T++
Sbjct: 350 VKTTSPRKYFVRPNANIVQPWDSCTITITLQAQKEYPQDMQCKDKFLIQST-RVAASTDM 408
Query: 398 DQV----WKEISPEQLMDYKLKCVFETPRGTNLNDSG 496
D++ + + + + + KLK V+ P G++ +DSG
Sbjct: 409 DEIPPDTFNKEVDKVIEEIKLKVVYTVPSGSS-DDSG 444
>11_03_0071 -
9589669-9590079,9592113-9592334,9592455-9592608,
9592981-9593212,9593303-9593558,9593850-9593870
Length = 431
Score = 39.1 bits (87), Expect = 0.003
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Frame = +2
Query: 119 IEPQNEXKFKGLFEHGCTTYMRLTNPTNDTVLFKIXTTAPKKYCVRPNSGVLAPNSKQEI 298
++P E +F + + ++LTN T+ + F KKY +PN G +AP S +
Sbjct: 305 LDPVRELRFPFEVKKDISCCLQLTNQTDYFIAFNTKANQ-KKYSTQPNKGTIAPWSSCYV 363
Query: 299 AITPQPVYLDPNENHKH-KFMVQSV-----IAPEGKTNIDQVWKEISPEQLMDYKLKCVF 460
+T + P H F+VQS + PE + ++++K+ + + + KL V+
Sbjct: 364 TVTMKAQETAPPYLQCHDMFVVQSTRVNEDLEPETEDITEELFKKTMGKVVDEEKLPIVY 423
>11_06_0355 +
22638029-22638281,22638365-22638593,22640039-22640189,
22640307-22640507,22641322-22641735
Length = 415
Score = 37.9 bits (84), Expect = 0.008
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +2
Query: 101 PNQVLTIEPQNEXKFKGLFEHGCTTYMRLTNPTNDTVLFKIXTTAPKKYCVRPNSGVLAP 280
P + L +P E +F + ++LTN ++D V F T KKY + + GV+AP
Sbjct: 282 PREFLGFDPL-ELRFPFETNKAISCVLQLTNKSDDIVEFYANTNK-KKYQIHRDQGVMAP 339
Query: 281 NSKQEIAITPQPV-YLDPNENHKHKFMVQS 367
S+ + +T QP PN F V+S
Sbjct: 340 WSRCYVIVTLQPQGSAPPNMQCDDMFFVRS 369
>07_03_0883 +
22280381-22280708,22282008-22282078,22282228-22282345,
22282406-22282521,22283946-22284023,22284123-22284242,
22284332-22284391
Length = 296
Score = 36.7 bits (81), Expect = 0.018
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 113 LTIEPQNEXKFKGLFEHGCTTYMRLTNPTNDTVLFKIXTTAPKKYCVRPNSGVLAP 280
L ++P N+ F + +R+ N + V FK TTAPK +RP +LAP
Sbjct: 98 LRLDPPNKLYFPYQPGQQVRSAIRIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAP 153
>08_01_0282 +
2299688-2299859,2300314-2300384,2300780-2300861,
2300949-2301067,2301338-2301415,2301500-2301619,
2301729-2301788
Length = 233
Score = 35.5 bits (78), Expect = 0.041
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +2
Query: 179 MRLTNPTNDTVLFKIXTTAPKKYCVRPNSGVLAPNSKQEIAITPQPVYLDPNENHK 346
+++ N + V FK TTAPK +RP G+LAP + I T P N K
Sbjct: 68 VKIKNISKSHVAFKFQTTAPKSCFMRPPGGILAPG--ESIIATVFKFVEHPENNEK 121
>01_06_1801 - 39954425-39954533,39955289-39955578,39955786-39956838,
39956998-39957263,39957345-39957420,39957525-39957605,
39957676-39957831,39958565-39958669,39958761-39959367,
39959514-39959585,39959802-39959953,39960063-39960240,
39960642-39960745,39960822-39960953,39961036-39961132,
39961280-39961407,39961533-39961592,39962799-39962918,
39963011-39963091,39963173-39963361,39963826-39964024,
39964177-39964257,39964398-39964588,39965226-39965382,
39965986-39966119,39966266-39966334,39966434-39966481,
39966572-39966646,39967112-39967192,39967399-39967461,
39967564-39967623,39967754-39967795,39968777-39968902,
39969027-39969176
Length = 1843
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +2
Query: 332 NENHKHKFMVQSVIAPEGKTNIDQVWKEISPEQL---MDYKLKCVF 460
NE+HKH+ + SV+ G+ + W SP+ L M++ +C+F
Sbjct: 1017 NESHKHQQHIASVLQRLGREKVK--WLNSSPDALKINMEFFQRCIF 1060
>03_05_0540 + 25375261-25376931
Length = 556
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 209 VLFKIXTTAPKKYCVRPNSGVLAPNSKQEIAITPQPVYL 325
V F++ ++ VRP++G+LAP + A+T + VYL
Sbjct: 38 VAFRLQPAVRSRFAVRPHTGILAPLA----AVTVEVVYL 72
>02_05_1272 +
35373843-35374031,35374343-35374490,35374586-35374704,
35374992-35375121,35375122-35375201
Length = 221
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 181 ETNEPDKRYSAIQDXNNSTKEILRASQFWSSCAKFETRNRNYSATCI 321
+ + D Y AI + + TK +R ++ WSSC K R + ++ +
Sbjct: 104 DMGDKDMDYLAIIEYHKPTKPRVRHTRPWSSCTKSSNRGNFHPSSIL 150
>02_05_0468 +
29287867-29287872,29289114-29289156,29289324-29289450,
29289615-29289703,29289794-29289854,29289944-29290011,
29290099-29290227,29291020-29291126,29291210-29291557,
29291803-29291883,29291905-29291952,29292331-29292496,
29292609-29292652
Length = 438
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -1
Query: 504 ALSPESLRLVPRGVSKTHFSL*SMSCSGL 418
A+ PESL P GV TH +L SC+GL
Sbjct: 374 AVDPESL---PEGVKVTHINLNDNSCAGL 399
>02_05_0596 +
30239186-30239567,30239642-30239742,30240680-30240777,
30241448-30241656,30241754-30241806,30242069-30242137
Length = 303
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 290 VSNLAQELQNWDARNISLVLLFXS*IALYR 201
VSN+ Q+L W AR+ +LVL I+ +R
Sbjct: 138 VSNVRQDLNEWQARHATLVLSAVKEISKFR 167
>02_01_0071 -
496936-497158,497231-497352,497918-497966,498141-498211,
498368-498454,498660-498740,498838-498901,498994-499057,
499246-499444,499916-500134
Length = 392
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +2
Query: 257 PNSGVLAPNSKQ-EIAITPQPVYLDPNENHKHKFMV--QSVIAPEGKTNIDQV 406
PN+ ++APN K I + Y P +N +MV +S+++ G +I+ V
Sbjct: 287 PNAVLIAPNRKNATILLQKLLYYFPPQDNDLSSYMVGDKSILSDAGLKSIEDV 339
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,854,206
Number of Sequences: 37544
Number of extensions: 353845
Number of successful extensions: 816
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -