Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8b09
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35371| Best HMM Match : Motile_Sperm (HMM E-Value=1.1e-21)          78   6e-15
SB_3540| Best HMM Match : RF-1 (HMM E-Value=2.1)                       65   5e-11
SB_25446| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06

>SB_35371| Best HMM Match : Motile_Sperm (HMM E-Value=1.1e-21)
          Length = 305

 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 34/65 (52%), Positives = 45/65 (69%)
 Frame = +2

Query: 107 QVLTIEPQNEXKFKGLFEHGCTTYMRLTNPTNDTVLFKIXTTAPKKYCVRPNSGVLAPNS 286
           QVL ++P  E KF+G F    T+ +RL NP+   V FK+ TTAPK+YCVRPNSG++ PN 
Sbjct: 6   QVLKLDPAIELKFRGPFTEVVTSSLRLANPSEKRVCFKVKTTAPKRYCVRPNSGIVEPNG 65

Query: 287 KQEIA 301
             E+A
Sbjct: 66  AVEVA 70


>SB_3540| Best HMM Match : RF-1 (HMM E-Value=2.1)
          Length = 395

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 28/53 (52%), Positives = 35/53 (66%)
 Frame = +2

Query: 311 QPVYLDPNENHKHKFMVQSVIAPEGKTNIDQVWKEISPEQLMDYKLKCVFETP 469
           QP   DP E  KHKFMVQ++ AP+  T+ + +W+E     LMD KLKCVFE P
Sbjct: 134 QPFEYDPKEKAKHKFMVQTMFAPDNITDQENLWREADANTLMDSKLKCVFELP 186


>SB_25446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 517

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +2

Query: 101 PNQVLTIEPQNEXKFKGLFEHG-CTTYMRLTNPTNDTVLFKIXTTAPKKYCVRPNSGVLA 277
           P   LTI P  E  F G          + L N ++  V +K+ TT+P+ Y VRP+SGV+ 
Sbjct: 285 PGNYLTIRPAEELVFIGSMSSAEILQTLTLKNTSSTQVAYKVKTTSPESYRVRPSSGVIN 344

Query: 278 PNSKQEIAITPQP 316
             S  E+++  QP
Sbjct: 345 QGSSAEVSVYLQP 357


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,219,197
Number of Sequences: 59808
Number of extensions: 425919
Number of successful extensions: 1194
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)