Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8b07
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    28   0.91 
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   4.8  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    26   4.8  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    25   6.4  
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    25   6.4  
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe...    25   8.5  

>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 18/73 (24%), Positives = 36/73 (49%)
 Frame = -3

Query: 252 PVIVSAISVNNQPSACFQVTIRLKFAEPDLSTLVFDSCKWDGICTDLAYYSHFFQFLEAL 73
           P ++ A+    + ++CFQ+  R   ++P   T + +   W+G+   +  Y      +EA 
Sbjct: 370 PALIRALGRAKRLNSCFQLLERYNLSDPTSDTSMTNVRSWEGL---MEAYFDTDHHVEAS 426

Query: 72  SLLYV*FFAKYNS 34
           +L+   FF K +S
Sbjct: 427 ALMKS-FFRKADS 438


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 270 IEDKDCPVIVSAISVNNQPSACFQVTIRLKFAEPDLS 160
           +ED+   +I S +S+ + PS     T    F +PDLS
Sbjct: 684 VEDEFLAIIYSWLSLPSPPSGLLGPTDTAVFVKPDLS 720


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 33  KNCIWRKIKHTTMIELPKIERNVNNTQDLCKC 128
           K   WRK K T++  +PK   +++ + D C+C
Sbjct: 593 KEFFWRK-KATSVCSVPKSITDLHGSFDACEC 623


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +3

Query: 225 LRKWPKLSPDSPCPLSGRTRVAMKQTITRRPEIVRICE 338
           LR  PK  P  P     R+R ++KQ   R  E VR+CE
Sbjct: 535 LRPPPKWKP-MPDLKVVRSRPSLKQRPLRSAEYVRVCE 571


>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 252 PVIVSAISVNNQPSACFQVTIRLKFAEPDLSTLVFDS 142
           PVI  + S+  +  A F+  IR +F + D++   +DS
Sbjct: 175 PVIAKSDSLTLEERAAFKQQIREEFVKHDINLYPYDS 211


>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 460

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 577 YMIRICKLSVLTRMSKLRMSDNR 509
           Y++R+C L  L ++S L M+D++
Sbjct: 430 YLLRLCSLQELHQISCLEMTDSQ 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,900
Number of Sequences: 5004
Number of extensions: 51701
Number of successful extensions: 173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)