Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8b07
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 31 0.53
11_01_0796 - 7000747-7001193 29 2.2
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92... 29 2.2
08_02_1418 - 26931896-26932339,26932435-26932668,26932805-269331... 29 3.8
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 28 5.0
01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986... 28 5.0
08_02_1395 - 26737972-26738418,26738505-26738738,26738887-267391... 27 8.7
04_04_1207 + 31734940-31735500,31736565-31736683,31736791-317373... 27 8.7
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 31.5 bits (68), Expect = 0.53
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = -1
Query: 182 SLLNLTFPLSSSTLANGTAFAQILRIIHISFNFW-KLYHC--CMFNFSPNTIL 33
S +NL+F ++LAN FA L IH++ N W + +C C F+ S T L
Sbjct: 578 SHINLSFTFQPNSLAN-YVFASCLAFIHLNLNGWCRAANCIVCEFDVSGATAL 629
>11_01_0796 - 7000747-7001193
Length = 148
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +1
Query: 463 APQASMHPGTPRGPTSDCLTCAVLTCASKPIACKCV 570
+P M G P S C+ C V+ A P C CV
Sbjct: 35 SPMLCMRRGLLLHPASCCIACRVVVRAVLPFQCTCV 70
>04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-920508
Length = 1157
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/78 (25%), Positives = 37/78 (47%)
Frame = +3
Query: 3 KLQHHNINVIKNCIWRKIKHTTMIELPKIERNVNNTQDLCKCRPICKSRRREWKGQVQQT 182
++ +N ++K ++++KH + ELP ++R + K I R W +
Sbjct: 981 RVDDNNQELLKTIKFQELKHIHLHELPSLQRICGHRIVAPKLETI--KIRGCW-SLTRLP 1037
Query: 183 SAELLLESKPKVDCLRKW 236
+ L KPKVDC ++W
Sbjct: 1038 AVGLDSTRKPKVDCEKEW 1055
>08_02_1418 -
26931896-26932339,26932435-26932668,26932805-26933110,
26933462-26933644,26934386-26934493
Length = 424
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 141 CKWDGICTDLAYYSHFFQFLEALSLLYV*FFA 46
C W G C Y FF F+ + +LL V FA
Sbjct: 190 CPWVGQCIGKRNYRFFFMFVSSTTLLCVYVFA 221
>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 160 HSRLRLLQMGRHLHRSCVLFTFLSIFGSSIIVVCLIF 50
H RL + GR + VL L + S IIV+C+ F
Sbjct: 2050 HLRLASIDAGRRTKINAVLKVVLPVLSSIIIVLCMSF 2086
>01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,
9863016-9863674,9863749-9863852,9863950-9864192,
9864262-9864376,9864696-9864909,9864995-9865511,
9866439-9866448,9867363-9867551,9867755-9868084,
9868639-9868872,9869303-9869743
Length = 1171
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3
Query: 141 CKWDGICTDLAYYSHFFQFLEALSLLYV*FF 49
C W G C L Y FF F+ +LL V F
Sbjct: 938 CPWVGQCIGLRNYRFFFLFISTSTLLCVYVF 968
>08_02_1395 -
26737972-26738418,26738505-26738738,26738887-26739183,
26739399-26739581,26739778-26739834,26739960-26740016,
26740228-26740322,26740714-26740765,26740821-26740910
Length = 503
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 141 CKWDGICTDLAYYSHFFQFLEALSLLYV*FFA 46
C W G C L Y F+ F+ + +LL + FA
Sbjct: 268 CPWVGQCIGLRNYRFFYMFVFSTTLLCLYVFA 299
>04_04_1207 +
31734940-31735500,31736565-31736683,31736791-31737318,
31738256-31738354,31739768-31739909
Length = 482
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 124 NAVPFAR--VEDESGKVRFSKLQPNCYLKASRRLIVYGNGRNYHRT 255
NAV A+ +E GKVR + L L+ L +YGN H T
Sbjct: 242 NAVDLAKALLEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHIT 287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,600,416
Number of Sequences: 37544
Number of extensions: 355560
Number of successful extensions: 1119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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