Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte8b07
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20521| Best HMM Match : Y_phosphatase (HMM E-Value=0)               28   6.6  
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.6  
SB_57825| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_57323| Best HMM Match : ShTK (HMM E-Value=0)                        27   8.8  

>SB_20521| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 834

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 159 WKGQVQQTSAELLLESKPKVDCLRKWPKLSPDSPCPLSGRTRVA-MKQT 302
           W+  V+  +   L +   KV C R WP  + + P  L GR  V+ +KQT
Sbjct: 129 WEQGVEVVAMVTLDKEGGKVKCHRYWPD-NTNQPLKLGGRFEVSLLKQT 176


>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 159  WKGQVQQTSAELLLESKPKVDCLRKWPKLSPDSPCPLSGRTRVA-MKQT 302
            W+  V+  +   L +   KV C R WP  + + P  L GR  V+ +KQT
Sbjct: 2374 WEQGVEVVAMVTLDKEGGKVKCHRYWPD-NTNQPLKLGGRFEVSLLKQT 2421


>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 138  CKSRRREWKGQVQQTSAELLLESKPKVDCLRKWPKLSPDSPCP 266
            CK+   E + +  ++  E  L+   ++  LR +    P+SPCP
Sbjct: 1284 CKTSDSEERNESAESDEENELDRVQRLTSLRSFTSGQPESPCP 1326


>SB_57825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 565 ICKLSVLTRMSKLRMSDNRWLVLSASRGAYSLAVHGQQAP 446
           +  L V T   K R+S + W   + +R AY+L +H ++AP
Sbjct: 400 LAALLVFTAAPKSRVSASPW---ACTRPAYTLIIHEREAP 436


>SB_57323| Best HMM Match : ShTK (HMM E-Value=0)
          Length = 911

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 445 AGPVVHAPQASMHPGTPRGPTSD 513
           +G  V  PQ ++ PGTP  PT D
Sbjct: 671 SGTTVAPPQTTVSPGTPVPPTDD 693


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,627,017
Number of Sequences: 59808
Number of extensions: 418981
Number of successful extensions: 1385
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1379
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)