Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte8b07
(599 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032657-2|CAA21738.1| 368|Caenorhabditis elegans Hypothetical ... 36 0.017
U42834-2|AAK68352.1| 121|Caenorhabditis elegans Hypothetical pr... 31 0.83
U53332-5|AAK31535.2| 821|Caenorhabditis elegans Related to yeas... 29 2.5
DQ178636-1|ABD75715.1| 826|Caenorhabditis elegans vacuolar prot... 29 2.5
AL021493-3|CAA16390.2| 243|Caenorhabditis elegans Hypothetical ... 29 3.3
Z83109-3|CAB05515.2| 300|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z92807-5|CAB07265.1| 480|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z29561-4|CAD91697.1| 498|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z29561-3|CAD54153.1| 846|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z29561-2|CAD54152.1| 882|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z29561-1|CAA82667.2| 861|Caenorhabditis elegans Hypothetical pr... 27 7.7
U73679-1|AAC67305.1| 861|Caenorhabditis elegans YNK1-a protein. 27 7.7
AL021482-5|CAA16342.1| 480|Caenorhabditis elegans Hypothetical ... 27 7.7
AC024821-2|AAP86610.1| 588|Caenorhabditis elegans Hypothetical ... 27 7.7
AC024821-1|AAK68901.2| 456|Caenorhabditis elegans Hypothetical ... 27 7.7
>AL032657-2|CAA21738.1| 368|Caenorhabditis elegans Hypothetical
protein Y47H9C.2 protein.
Length = 368
Score = 36.3 bits (80), Expect = 0.017
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -3
Query: 168 DLSTLVFDS-CKWDGICTDLAYYSHFFQFLEALSLLYV*FFA 46
D L+FD C W G C L Y++F++F+ LS+L + FA
Sbjct: 184 DNCVLMFDHHCPWVGNCIGLRNYTYFYRFVFCLSILVIYLFA 225
>U42834-2|AAK68352.1| 121|Caenorhabditis elegans Hypothetical
protein F28B4.4 protein.
Length = 121
Score = 30.7 bits (66), Expect = 0.83
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = -1
Query: 407 CAYFPSHLQVL*IGCIGCTFYWSFTYPHYLWSPGDGLLH---SNTSPP 273
C FP H VL I C+ C ++ Y W LL+ + T+PP
Sbjct: 52 CCMFPIHDGVLVISCLSCIIIFTLLLGLYCWCWPTSLLNRRRTRTAPP 99
>U53332-5|AAK31535.2| 821|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 35 protein.
Length = 821
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 159 WKGQVQQTSAELLLESKPKVDCLRKWPKLSPDSPCPL 269
W GQ +T+ E + K VD LRK K++ + PL
Sbjct: 696 WHGQTLETNGEKMKNGKKVVDILRKAAKIARECLEPL 732
>DQ178636-1|ABD75715.1| 826|Caenorhabditis elegans vacuolar protein
sorting factor protein.
Length = 826
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 159 WKGQVQQTSAELLLESKPKVDCLRKWPKLSPDSPCPL 269
W GQ +T+ E + K VD LRK K++ + PL
Sbjct: 701 WHGQTLETNGEKMKNGKKVVDILRKAAKIARECLEPL 737
>AL021493-3|CAA16390.2| 243|Caenorhabditis elegans Hypothetical
protein Y51A2B.3 protein.
Length = 243
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 48 RKIKHTTMIELPKIERNVNNTQ-DLCKCRPICKSRRREWKGQVQQTSAELLLE 203
R IK+ +I P +E N+ T+ C+ +C R +GQ+Q L E
Sbjct: 125 RLIKYFDIIVKPYLELNLTETEVTYILCQIVCNYAGRRLQGQIQAAGERFLEE 177
>Z83109-3|CAB05515.2| 300|Caenorhabditis elegans Hypothetical
protein F44G3.5 protein.
Length = 300
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 104 IHISFNFWKLYHCCMFNFSPNTILDYIN 21
I +F+F+ Y C FNF +LD IN
Sbjct: 249 IQSAFSFFNFYGCSFFNFVVYFLLDPIN 276
>Z92807-5|CAB07265.1| 480|Caenorhabditis elegans Hypothetical
protein K11D9.3 protein.
Length = 480
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +2
Query: 395 ENRRITHSQNVLCVLQMRGLLS 460
E++RI HS+ V+ +LQ +GL+S
Sbjct: 252 EHKRIEHSKTVMEMLQTKGLMS 273
>Z29561-4|CAD91697.1| 498|Caenorhabditis elegans Hypothetical
protein R10E12.1d protein.
Length = 498
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 227 TEMAETITGQSLSSIRADSCCYEADHHQETRD 322
+++AE + Q L+ +R+ +CC D HQ D
Sbjct: 39 SDVAEAV--QELNKLRSKACCQPLDKHQSALD 68
>Z29561-3|CAD54153.1| 846|Caenorhabditis elegans Hypothetical
protein R10E12.1c protein.
Length = 846
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 227 TEMAETITGQSLSSIRADSCCYEADHHQETRD 322
+++AE + Q L+ +R+ +CC D HQ D
Sbjct: 39 SDVAEAV--QELNKLRSKACCQPLDKHQSALD 68
>Z29561-2|CAD54152.1| 882|Caenorhabditis elegans Hypothetical
protein R10E12.1b protein.
Length = 882
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 227 TEMAETITGQSLSSIRADSCCYEADHHQETRD 322
+++AE + Q L+ +R+ +CC D HQ D
Sbjct: 39 SDVAEAV--QELNKLRSKACCQPLDKHQSALD 68
>Z29561-1|CAA82667.2| 861|Caenorhabditis elegans Hypothetical
protein R10E12.1a protein.
Length = 861
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 227 TEMAETITGQSLSSIRADSCCYEADHHQETRD 322
+++AE + Q L+ +R+ +CC D HQ D
Sbjct: 39 SDVAEAV--QELNKLRSKACCQPLDKHQSALD 68
>U73679-1|AAC67305.1| 861|Caenorhabditis elegans YNK1-a protein.
Length = 861
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 227 TEMAETITGQSLSSIRADSCCYEADHHQETRD 322
+++AE + Q L+ +R+ +CC D HQ D
Sbjct: 39 SDVAEAV--QELNKLRSKACCQPLDKHQSALD 68
>AL021482-5|CAA16342.1| 480|Caenorhabditis elegans Hypothetical
protein K11D9.3 protein.
Length = 480
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +2
Query: 395 ENRRITHSQNVLCVLQMRGLLS 460
E++RI HS+ V+ +LQ +GL+S
Sbjct: 252 EHKRIEHSKTVMEMLQTKGLMS 273
>AC024821-2|AAP86610.1| 588|Caenorhabditis elegans Hypothetical
protein Y55B1AR.2b protein.
Length = 588
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 451 PVVHAPQASMHPGTPRGPTSDCLTCAVLTCASKPIACKCVSCII 582
P+V APQ PG PR P ++ +L +S P +S ++
Sbjct: 195 PIVQAPQIPPSPGLPRLPPGAKVSEWLLERSSSPDNVSVISSVL 238
>AC024821-1|AAK68901.2| 456|Caenorhabditis elegans Hypothetical
protein Y55B1AR.2a protein.
Length = 456
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 451 PVVHAPQASMHPGTPRGPTSDCLTCAVLTCASKPIACKCVSCII 582
P+V APQ PG PR P ++ +L +S P +S ++
Sbjct: 195 PIVQAPQIPPSPGLPRLPPGAKVSEWLLERSSSPDNVSVISSVL 238
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,466,633
Number of Sequences: 27780
Number of extensions: 314880
Number of successful extensions: 1017
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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